Erman B - Search Results

1

Fine tuning rigid body docking results using the Dreiding force field: A computational study of 36 known nanobody-protein complexes.

Hacisuleyman A, Erman B. Hacisuleyman A, et al. Among authors: erman b. Proteins. 2023 Oct;91(10):1417-1426. doi: 10.1002/prot.26529. Epub 2023 May 26. Proteins. 2023. PMID: 37232507

2

Relationships between amino acid sequence and backbone torsion angle preferences.

Keskin O, Yuret D, Gursoy A, Turkay M, Erman B. Keskin O, et al. Among authors: erman b. Proteins. 2004 Jun 1;55(4):992-8. doi: 10.1002/prot.20100. Proteins. 2004. PMID: 15146495

3

Computational basis of knowledge-based conformational probabilities derived from local- and long-range interactions in proteins.

Ormeci L, Gursoy A, Tunca G, Erman B. Ormeci L, et al. Among authors: erman b. Proteins. 2007 Jan 1;66(1):29-40. doi: 10.1002/prot.21206. Proteins. 2007. PMID: 17039547

4

Quasi-harmonic fluctuations of two bound peptides.

Gur M, Erman B. Gur M, et al. Among authors: erman b. Proteins. 2012 Dec;80(12):2769-79. doi: 10.1002/prot.24160. Epub 2012 Sep 15. Proteins. 2012. PMID: 22890690

5

A fast approximate method of identifying paths of allosteric communication in proteins.

Erman B. Erman B. Proteins. 2013 Jul;81(7):1097-101. doi: 10.1002/prot.24284. Epub 2013 Apr 20. Proteins. 2013. PMID: 23508936

6

Effects of ligand binding upon flexibility of proteins.

Erman B. Erman B. Proteins. 2015 May;83(5):805-8. doi: 10.1002/prot.24785. Epub 2015 Mar 25. Proteins. 2015. PMID: 25737428

7

Universal features of fluctuations in globular proteins.

Erman B. Erman B. Proteins. 2016 Jun;84(6):721-5. doi: 10.1002/prot.25032. Epub 2016 Mar 24. Proteins. 2016. PMID: 26971570

8

Entropy Transfer between Residue Pairs and Allostery in Proteins: Quantifying Allosteric Communication in Ubiquitin.

Hacisuleyman A, Erman B. Hacisuleyman A, et al. Among authors: erman b. PLoS Comput Biol. 2017 Jan 17;13(1):e1005319. doi: 10.1371/journal.pcbi.1005319. eCollection 2017 Jan. PLoS Comput Biol. 2017. PMID: 28095404 Free PMC article.

9

Causality, transfer entropy, and allosteric communication landscapes in proteins with harmonic interactions.

Hacisuleyman A, Erman B. Hacisuleyman A, et al. Among authors: erman b. Proteins. 2017 Jun;85(6):1056-1064. doi: 10.1002/prot.25272. Epub 2017 Mar 17. Proteins. 2017. PMID: 28241380

10

A computational model for controlling conformational cooperativity and function in proteins.

Erman B. Erman B. Proteins. 2018 Sep;86(9):1001-1009. doi: 10.1002/prot.25535. Epub 2018 Aug 25. Proteins. 2018. PMID: 30051502

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