Helikar T - Search Results

1

Factors Influencing Instructors' Adoption and Continued Use of Computing Science Technologies: A Case Study in the Context of Cell Collective.

Song C, Helikar R, Smith WM, Helikar T. Song C, et al. Among authors: helikar t. CBE Life Sci Educ. 2023 Sep;22(3):ar29. doi: 10.1187/cbe.22-11-0239. CBE Life Sci Educ. 2023. PMID: 37279087 Free PMC article.

2

ccNetViz: a WebGL-based JavaScript library for visualization of large networks.

Saska A, Tichy D, Moore R, Rasquinha A, Akdas C, Zhao X, Fabbri R, Jeličić A, Grover G, Jotwani H, Shadab M, Helikar RM, Helikar T. Saska A, et al. Among authors: helikar t, helikar rm. Bioinformatics. 2020 Aug 15;36(16):4527-4529. doi: 10.1093/bioinformatics/btaa559. Bioinformatics. 2020. PMID: 32516383 Free PMC article.

3

Teaching Metabolism in Upper-Division Undergraduate Biochemistry Courses using Online Computational Systems and Dynamical Models Improves Student Performance.

Booth CS, Song C, Howell ME, Rasquinha A, Saska A, Helikar R, Sikich SM, Couch BA, van Dijk K, Roston RL, Helikar T. Booth CS, et al. Among authors: helikar t, helikar r. CBE Life Sci Educ. 2021 Mar;20(1):ar13. doi: 10.1187/cbe.20-05-0105. CBE Life Sci Educ. 2021. PMID: 33635127 Free PMC article.

4

Integrating interactive computational modeling in biology curricula.

Helikar T, Cutucache CE, Dahlquist LM, Herek TA, Larson JJ, Rogers JA. Helikar T, et al. PLoS Comput Biol. 2015 Mar 19;11(3):e1004131. doi: 10.1371/journal.pcbi.1004131. eCollection 2015 Mar. PLoS Comput Biol. 2015. PMID: 25790483 Free PMC article.

5

Student Understanding of DNA Structure-Function Relationships Improves from Using 3D Learning Modules with Dynamic 3D Printed Models.

Howell ME, Booth CS, Sikich SM, Helikar T, Roston RL, Couch BA, van Dijk K. Howell ME, et al. Among authors: helikar t. Biochem Mol Biol Educ. 2019 May;47(3):303-317. doi: 10.1002/bmb.21234. Epub 2019 Mar 21. Biochem Mol Biol Educ. 2019. PMID: 30897273 Free article.

6

Simulating a Computational Biological Model, Rather Than Reading, Elicits Changes in Brain Activity during Biological Reasoning.

Clark CAC, Helikar T, Dauer J. Clark CAC, et al. Among authors: helikar t. CBE Life Sci Educ. 2020 Sep;19(3):ar45. doi: 10.1187/cbe.19-11-0237. CBE Life Sci Educ. 2020. PMID: 32870080 Free PMC article.

7

The Need for Research-Grade Systems Modeling Technologies for Life Science Education.

Helikar T. Helikar T. Trends Mol Med. 2021 Feb;27(2):100-103. doi: 10.1016/j.molmed.2020.11.005. Epub 2020 Dec 15. Trends Mol Med. 2021. PMID: 33334676 Free PMC article.

8

SysMod: the ISCB community for data-driven computational modelling and multi-scale analysis of biological systems.

Dräger A, Helikar T, Barberis M, Birtwistle M, Calzone L, Chaouiya C, Hasenauer J, Karr JR, Niarakis A, Rodríguez Martínez M, Saez-Rodriguez J, Thakar J. Dräger A, et al. Among authors: helikar t. Bioinformatics. 2021 Nov 5;37(21):3702-3706. doi: 10.1093/bioinformatics/btab229. Bioinformatics. 2021. PMID: 34179955 Free PMC article.

9

Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology.

Niarakis A, Waltemath D, Glazier J, Schreiber F, Keating SM, Nickerson D, Chaouiya C, Siegel A, Noël V, Hermjakob H, Helikar T, Soliman S, Calzone L. Niarakis A, et al. Among authors: helikar t. Brief Bioinform. 2022 Jul 18;23(4):bbac212. doi: 10.1093/bib/bbac212. Brief Bioinform. 2022. PMID: 35671510 Free PMC article.

10

The Cell Collective: toward an open and collaborative approach to systems biology.

Helikar T, Kowal B, McClenathan S, Bruckner M, Rowley T, Madrahimov A, Wicks B, Shrestha M, Limbu K, Rogers JA. Helikar T, et al. BMC Syst Biol. 2012 Aug 7;6:96. doi: 10.1186/1752-0509-6-96. BMC Syst Biol. 2012. PMID: 22871178 Free PMC article.

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