Palsson BO - Search Results

1

CyuR is a Dual Regulator for L-Cysteine Dependent Antimicrobial Resistance in Escherichia coli.

Rodionova IA, Lim HG, Rodionov DA, Hutchison Y, Dalldorf C, Gao Y, Monk J, Palsson BO. Rodionova IA, et al. Among authors: palsson bo. bioRxiv [Preprint]. 2023 May 16:2023.05.16.541025. doi: 10.1101/2023.05.16.541025. bioRxiv. 2023. Update in: Commun Biol. 2024 Sep 17;7(1):1160. doi: 10.1038/s42003-024-06831-0 PMID: 37292663 Free PMC article. Updated. Preprint.

2

Optimizing genome-scale network reconstructions.

Monk J, Nogales J, Palsson BO. Monk J, et al. Among authors: palsson bo. Nat Biotechnol. 2014 May;32(5):447-52. doi: 10.1038/nbt.2870. Nat Biotechnol. 2014. PMID: 24811519 No abstract available.

3

Genetics. Predicting microbial growth.

Monk J, Palsson BO. Monk J, et al. Among authors: palsson bo. Science. 2014 Jun 27;344(6191):1448-9. doi: 10.1126/science.1253388. Science. 2014. PMID: 24970063 No abstract available.

4

Using Genome-scale Models to Predict Biological Capabilities.

O'Brien EJ, Monk JM, Palsson BO. O'Brien EJ, et al. Among authors: palsson bo. Cell. 2015 May 21;161(5):971-987. doi: 10.1016/j.cell.2015.05.019. Cell. 2015. PMID: 26000478 Free PMC article. Review.

5

Gapless, Unambiguous Genome Sequence for Escherichia coli C, a Workhorse of Industrial Biology.

Pekar JE, Phaneuf P, Szubin R, Palsson B, Feist A, Monk JM. Pekar JE, et al. Microbiol Resour Announc. 2018 Oct 4;7(13):e00890-18. doi: 10.1128/MRA.00890-18. eCollection 2018 Oct. Microbiol Resour Announc. 2018. PMID: 30533692 Free PMC article.

6

Machine learning with random subspace ensembles identifies antimicrobial resistance determinants from pan-genomes of three pathogens.

Hyun JC, Kavvas ES, Monk JM, Palsson BO. Hyun JC, et al. Among authors: palsson bo. PLoS Comput Biol. 2020 Mar 2;16(3):e1007608. doi: 10.1371/journal.pcbi.1007608. eCollection 2020 Mar. PLoS Comput Biol. 2020. PMID: 32119670 Free PMC article.

7

Adaptations of Escherichia coli strains to oxidative stress are reflected in properties of their structural proteomes.

Mih N, Monk JM, Fang X, Catoiu E, Heckmann D, Yang L, Palsson BO. Mih N, et al. Among authors: palsson bo. BMC Bioinformatics. 2020 Apr 29;21(1):162. doi: 10.1186/s12859-020-3505-y. BMC Bioinformatics. 2020. PMID: 32349661 Free PMC article.

8

A biochemically-interpretable machine learning classifier for microbial GWAS.

Kavvas ES, Yang L, Monk JM, Heckmann D, Palsson BO. Kavvas ES, et al. Among authors: palsson bo. Nat Commun. 2020 May 22;11(1):2580. doi: 10.1038/s41467-020-16310-9. Nat Commun. 2020. PMID: 32444610 Free PMC article.

9

High-Quality Genome-Scale Models From Error-Prone, Long-Read Assemblies.

Broddrick JT, Szubin R, Norsigian CJ, Monk JM, Palsson BO, Parenteau MN. Broddrick JT, et al. Among authors: palsson bo. Front Microbiol. 2020 Nov 12;11:596626. doi: 10.3389/fmicb.2020.596626. eCollection 2020. Front Microbiol. 2020. PMID: 33281796 Free PMC article.

10

DeepTFactor: A deep learning-based tool for the prediction of transcription factors.

Kim GB, Gao Y, Palsson BO, Lee SY. Kim GB, et al. Among authors: palsson bo. Proc Natl Acad Sci U S A. 2021 Jan 12;118(2):e2021171118. doi: 10.1073/pnas.2021171118. Proc Natl Acad Sci U S A. 2021. PMID: 33372147 Free PMC article.

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