Qu XJ - Search Results

1

Progress, challenge and prospect of plant plastome annotation.

Qu XJ, Zou D, Zhang RY, Stull GW, Yi TS. Qu XJ, et al. Front Plant Sci. 2023 May 30;14:1166140. doi: 10.3389/fpls.2023.1166140. eCollection 2023. Front Plant Sci. 2023. PMID: 37324662 Free PMC article. Review.

2

PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes.

Qu XJ, Moore MJ, Li DZ, Yi TS. Qu XJ, et al. Plant Methods. 2019 May 21;15:50. doi: 10.1186/s13007-019-0435-7. eCollection 2019. Plant Methods. 2019. PMID: 31139240 Free PMC article.

3

Plastome Reduction in the Only Parasitic Gymnosperm Parasitaxus Is Due to Losses of Photosynthesis but Not Housekeeping Genes and Apparently Involves the Secondary Gain of a Large Inverted Repeat.

Qu XJ, Fan SJ, Wicke S, Yi TS. Qu XJ, et al. Genome Biol Evol. 2019 Oct 1;11(10):2789-2796. doi: 10.1093/gbe/evz187. Genome Biol Evol. 2019. PMID: 31504501 Free PMC article.

4

Plastid phylogenomic analyses of Fagales reveal signatures of conflict and ancient chloroplast capture.

Yang YY, Qu XJ, Zhang R, Stull GW, Yi TS. Yang YY, et al. Among authors: qu xj. Mol Phylogenet Evol. 2021 Oct;163:107232. doi: 10.1016/j.ympev.2021.107232. Epub 2021 Jun 13. Mol Phylogenet Evol. 2021. PMID: 34129935

5

Insights into the Existence of Isomeric Plastomes in Cupressoideae (Cupressaceae).

Qu XJ, Wu CS, Chaw SM, Yi TS. Qu XJ, et al. Genome Biol Evol. 2017 Apr 1;9(4):1110-1119. doi: 10.1093/gbe/evx071. Genome Biol Evol. 2017. PMID: 28431152 Free PMC article.

6

Gene duplications and phylogenomic conflict underlie major pulses of phenotypic evolution in gymnosperms.

Stull GW, Qu XJ, Parins-Fukuchi C, Yang YY, Yang JB, Yang ZY, Hu Y, Ma H, Soltis PS, Soltis DE, Li DZ, Smith SA, Yi TS. Stull GW, et al. Among authors: qu xj. Nat Plants. 2021 Aug;7(8):1015-1025. doi: 10.1038/s41477-021-00964-4. Epub 2021 Jul 19. Nat Plants. 2021. PMID: 34282286

7

Phylotranscriptomic analyses reveal multiple whole-genome duplication events, the history of diversification and adaptations in the Araceae.

Zhao L, Yang YY, Qu XJ, Ma H, Hu Y, Li HT, Yi TS, Li DZ. Zhao L, et al. Among authors: qu xj. Ann Bot. 2023 Feb 7;131(1):199-214. doi: 10.1093/aob/mcac062. Ann Bot. 2023. PMID: 35671385 Free PMC article.

8

Multiple measures could alleviate long-branch attraction in phylogenomic reconstruction of Cupressoideae (Cupressaceae).

Qu XJ, Jin JJ, Chaw SM, Li DZ, Yi TS. Qu XJ, et al. Sci Rep. 2017 Jan 25;7:41005. doi: 10.1038/srep41005. Sci Rep. 2017. PMID: 28120880 Free PMC article.

9

Plastid phylogenomics sheds light on divergence time and ecological adaptations of the tribe Persicarieae (Polygonaceae).

Cao DL, Zhang XJ, Qu XJ, Fan SJ. Cao DL, et al. Among authors: qu xj. Front Plant Sci. 2022 Dec 8;13:1046253. doi: 10.3389/fpls.2022.1046253. eCollection 2022. Front Plant Sci. 2022. PMID: 36570890 Free PMC article.

10

Comparative Plastomes and Phylogenetic Analysis of Cleistogenes and Closely Related Genera (Poaceae).

Wang R, Liu K, Zhang XJ, Chen WL, Qu XJ, Fan SJ. Wang R, et al. Among authors: qu xj. Front Plant Sci. 2021 Mar 25;12:638597. doi: 10.3389/fpls.2021.638597. eCollection 2021. Front Plant Sci. 2021. PMID: 33841465 Free PMC article.

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