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Genome-wide DNA methylation sequencing identifies epigenetic perturbations in the upper airways under long-term exposure to moderate levels of ambient air pollution.
Messingschlager M, Bartel-Steinbach M, Mackowiak SD, Denkena J, Bieg M, Klös M, Seegebarth A, Straff W, Süring K, Ishaque N, Eils R, Lehmann I, Lermen D, Trump S. Messingschlager M, et al. Among authors: denkena j. Environ Res. 2023 Sep 15;233:116413. doi: 10.1016/j.envres.2023.116413. Epub 2023 Jun 20. Environ Res. 2023. PMID: 37343754 Free article.
Neuronal activity regulates alternative exon usage.
Denkena J, Zaisser A, Merz B, Klinger B, Kuhl D, Blüthgen N, Hermey G. Denkena J, et al. Mol Brain. 2020 Nov 10;13(1):148. doi: 10.1186/s13041-020-00685-3. Mol Brain. 2020. PMID: 33172478 Free PMC article.
Region-level epimutation rates in Arabidopsis thaliana.
Denkena J, Johannes F, Colomé-Tatché M. Denkena J, et al. Heredity (Edinb). 2021 Aug;127(2):190-202. doi: 10.1038/s41437-021-00441-w. Epub 2021 May 8. Heredity (Edinb). 2021. PMID: 33966050 Free PMC article.
A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa.
Hofmeister BT, Denkena J, Colomé-Tatché M, Shahryary Y, Hazarika R, Grimwood J, Mamidi S, Jenkins J, Grabowski PP, Sreedasyam A, Shu S, Barry K, Lail K, Adam C, Lipzen A, Sorek R, Kudrna D, Talag J, Wing R, Hall DW, Jacobsen D, Tuskan GA, Schmutz J, Johannes F, Schmitz RJ. Hofmeister BT, et al. Among authors: denkena j. Genome Biol. 2020 Oct 6;21(1):259. doi: 10.1186/s13059-020-02162-5. Genome Biol. 2020. PMID: 33023654 Free PMC article.