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Page 1
Enhancing global preparedness during an ongoing pandemic from partial and noisy data.
Klamser PP, d'Andrea V, Di Lauro F, Zachariae A, Bontorin S, Di Nardo A, Hall M, Maier BF, Ferretti L, Brockmann D, De Domenico M. Klamser PP, et al. Among authors: ferretti l. PNAS Nexus. 2023 Jun 7;2(6):pgad192. doi: 10.1093/pnasnexus/pgad192. eCollection 2023 Jun. PNAS Nexus. 2023. PMID: 37351112 Free PMC article.
Within-Host Recombination in the Foot-and-Mouth Disease Virus Genome.
Ferretti L, Di Nardo A, Singer B, Lasecka-Dykes L, Logan G, Wright CF, Pérez-Martín E, King DP, Tuthill TJ, Ribeca P. Ferretti L, et al. Viruses. 2018 Apr 25;10(5):221. doi: 10.3390/v10050221. Viruses. 2018. PMID: 29693634 Free PMC article.
A Deeper Insight into Evolutionary Patterns and Phylogenetic History of ASFV Epidemics in Sardinia (Italy) through Extensive Genomic Sequencing.
Fiori MS, Sanna D, Scarpa F, Floris M, Di Nardo A, Ferretti L, Loi F, Cappai S, Sechi AM, Angioi PP, Zinellu S, Sirica R, Evangelista E, Casu M, Franzoni G, Oggiano A, Dei Giudici S. Fiori MS, et al. Among authors: ferretti l. Viruses. 2021 Oct 4;13(10):1994. doi: 10.3390/v13101994. Viruses. 2021. PMID: 34696424 Free PMC article.
Estimating SARS-CoV-2 variant fitness and the impact of interventions in England using statistical and geo-spatial agent-based models.
Hinch R, Panovska-Griffiths J, Probert WJM, Ferretti L, Wymant C, Di Lauro F, Baya N, Ghafari M, Abeler-Dörner L; COVID-19 Genomics UK (COG-UK) Consortium; Fraser C. Hinch R, et al. Among authors: ferretti l. Philos Trans A Math Phys Eng Sci. 2022 Oct 3;380(2233):20210304. doi: 10.1098/rsta.2021.0304. Epub 2022 Aug 15. Philos Trans A Math Phys Eng Sci. 2022. PMID: 35965459 Free PMC article.
Drivers of epidemic dynamics in real time from daily digital COVID-19 measurements.
Kendall M, Ferretti L, Wymant C, Tsallis D, Petrie J, Di Francia A, Di Lauro F, Abeler-Dörner L, Manley H, Panovska-Griffiths J, Ledda A, Didelot X, Fraser C. Kendall M, et al. Among authors: ferretti l. Science. 2024 Aug 16;385(6710):eadm8103. doi: 10.1126/science.adm8103. Epub 2024 Aug 16. Science. 2024. PMID: 38991048
SARS-CoV-2 within-host diversity and transmission.
Lythgoe KA, Hall M, Ferretti L, de Cesare M, MacIntyre-Cockett G, Trebes A, Andersson M, Otecko N, Wise EL, Moore N, Lynch J, Kidd S, Cortes N, Mori M, Williams R, Vernet G, Justice A, Green A, Nicholls SM, Ansari MA, Abeler-Dörner L, Moore CE, Peto TEA, Eyre DW, Shaw R, Simmonds P, Buck D, Todd JA; Oxford Virus Sequencing Analysis Group (OVSG); Connor TR, Ashraf S, da Silva Filipe A, Shepherd J, Thomson EC; COVID-19 Genomics UK (COG-UK) Consortium; Bonsall D, Fraser C, Golubchik T. Lythgoe KA, et al. Among authors: ferretti l. Science. 2021 Apr 16;372(6539):eabg0821. doi: 10.1126/science.abg0821. Epub 2021 Mar 9. Science. 2021. PMID: 33688063 Free PMC article.
Evolutionary and Ecological Drivers Shape the Emergence and Extinction of Foot-and-Mouth Disease Virus Lineages.
Di Nardo A, Ferretti L, Wadsworth J, Mioulet V, Gelman B, Karniely S, Scherbakov A, Ziay G, Özyörük F, Parlak Ü, Tuncer-Göktuna P, Hassanzadeh R, Khalaj M, Dastoor SM, Abdollahi D, Khan EU, Afzal M, Hussain M, Knowles NJ, King DP. Di Nardo A, et al. Among authors: ferretti l. Mol Biol Evol. 2021 Sep 27;38(10):4346-4361. doi: 10.1093/molbev/msab172. Mol Biol Evol. 2021. PMID: 34115138 Free PMC article.
Phylogenetic estimation of the viral fitness landscape of HIV-1 set-point viral load.
Zhao L, Wymant C, Blanquart F, Golubchik T, Gall A, Bakker M, Bezemer D, Hall M, Ong SH, Albert J, Bannert N, Fellay J, Grabowski MK, Gunsenheimer-Bartmeyer B, Günthard HF, Kivelä P, Kouyos RD, Laeyendecker O, Meyer L, Porter K, van Sighem A, van der Valk M, Berkhout B, Kellam P, Cornelissen M, Reiss P, Fraser C, Ferretti L. Zhao L, et al. Among authors: ferretti l. Virus Evol. 2022 Mar 16;8(1):veac022. doi: 10.1093/ve/veac022. eCollection 2022. Virus Evol. 2022. PMID: 35402002 Free PMC article.
Statistical and agent-based modelling of the transmissibility of different SARS-CoV-2 variants in England and impact of different interventions.
Panovska-Griffiths J, Swallow B, Hinch R, Cohen J, Rosenfeld K, Stuart RM, Ferretti L, Di Lauro F, Wymant C, Izzo A, Waites W, Viner R, Bonell C, Fraser C, Klein D, Kerr CC; COVID-19 Genomics UK (COG-UK) Consortium. Panovska-Griffiths J, et al. Among authors: ferretti l. Philos Trans A Math Phys Eng Sci. 2022 Oct 3;380(2233):20210315. doi: 10.1098/rsta.2021.0315. Epub 2022 Aug 15. Philos Trans A Math Phys Eng Sci. 2022. PMID: 35965458 Free PMC article.
277 results