Li F - Search Results

1

Digerati - A multipath parallel hybrid deep learning framework for the identification of mycobacterial PE/PPE proteins.

Li F, Guo X, Bi Y, Jia R, Pitt ME, Pan S, Li S, Gasser RB, Coin LJ, Song J. Li F, et al. Among authors: li s. Comput Biol Med. 2023 Sep;163:107155. doi: 10.1016/j.compbiomed.2023.107155. Epub 2023 Jun 21. Comput Biol Med. 2023. PMID: 37356289

2

Clarion is a multi-label problem transformation method for identifying mRNA subcellular localizations.

Bi Y, Li F, Guo X, Wang Z, Pan T, Guo Y, Webb GI, Yao J, Jia C, Song J. Bi Y, et al. Among authors: li f. Brief Bioinform. 2022 Nov 19;23(6):bbac467. doi: 10.1093/bib/bbac467. Brief Bioinform. 2022. PMID: 36341591 Free PMC article.

3

VPatho: a deep learning-based two-stage approach for accurate prediction of gain-of-function and loss-of-function variants.

Ge F, Li C, Iqbal S, Muhammad A, Li F, Thafar MA, Yan Z, Worachartcheewan A, Xu X, Song J, Yu DJ. Ge F, et al. Among authors: li f, li c. Brief Bioinform. 2023 Jan 19;24(1):bbac535. doi: 10.1093/bib/bbac535. Brief Bioinform. 2023. PMID: 36528806

4

Predicting Pseudouridine Sites with Porpoise.

Guo X, Li F, Song J. Guo X, et al. Among authors: li f. Methods Mol Biol. 2023;2624:139-151. doi: 10.1007/978-1-0716-2962-8_10. Methods Mol Biol. 2023. PMID: 36723814

5

ResNetKhib: a novel cell type-specific tool for predicting lysine 2-hydroxyisobutylation sites via transfer learning.

Jia X, Zhao P, Li F, Qin Z, Ren H, Li J, Miao C, Zhao Q, Akutsu T, Dou G, Chen Z, Song J. Jia X, et al. Among authors: li f, li j. Brief Bioinform. 2023 Mar 19;24(2):bbad063. doi: 10.1093/bib/bbad063. Brief Bioinform. 2023. PMID: 36880172 Free PMC article.

6

ATTIC is an integrated approach for predicting A-to-I RNA editing sites in three species.

Chen R, Li F, Guo X, Bi Y, Li C, Pan S, Coin LJM, Song J. Chen R, et al. Among authors: li f, li c. Brief Bioinform. 2023 May 19;24(3):bbad170. doi: 10.1093/bib/bbad170. Brief Bioinform. 2023. PMID: 37150785 Free PMC article.

7

Prediction of Multiple Types of RNA Modifications via Biological Language Model.

Zhang Y, Ge F, Li F, Yang X, Song J, Yu DJ. Zhang Y, et al. Among authors: li f. IEEE/ACM Trans Comput Biol Bioinform. 2023 Sep-Oct;20(5):3205-3214. doi: 10.1109/TCBB.2023.3283985. Epub 2023 Oct 9. IEEE/ACM Trans Comput Biol Bioinform. 2023. PMID: 37289599

8

iAMPCN: a deep-learning approach for identifying antimicrobial peptides and their functional activities.

Xu J, Li F, Li C, Guo X, Landersdorfer C, Shen HH, Peleg AY, Li J, Imoto S, Yao J, Akutsu T, Song J. Xu J, et al. Among authors: li f, li c, li j. Brief Bioinform. 2023 Jul 20;24(4):bbad240. doi: 10.1093/bib/bbad240. Brief Bioinform. 2023. PMID: 37369638 Free PMC article.

9

ProsperousPlus: a one-stop and comprehensive platform for accurate protease-specific substrate cleavage prediction and machine-learning model construction.

Li F, Wang C, Guo X, Akutsu T, Webb GI, Coin LJM, Kurgan L, Song J. Li F, et al. Brief Bioinform. 2023 Sep 22;24(6):bbad372. doi: 10.1093/bib/bbad372. Brief Bioinform. 2023. PMID: 37874948

10

PLANNER: a multi-scale deep language model for the origins of replication site prediction.

Wang C, He Z, Jia R, Pan S, Coin LJ, Song J, Li F. Wang C, et al. Among authors: li f. IEEE J Biomed Health Inform. 2024 Jan 4;PP. doi: 10.1109/JBHI.2024.3349584. Online ahead of print. IEEE J Biomed Health Inform. 2024. PMID: 38190667

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