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The cis-Regulatory Atlas of the Mouse Immune System.
Yoshida H, Lareau CA, Ramirez RN, Rose SA, Maier B, Wroblewska A, Desland F, Chudnovskiy A, Mortha A, Dominguez C, Tellier J, Kim E, Dwyer D, Shinton S, Nabekura T, Qi Y, Yu B, Robinette M, Kim KW, Wagers A, Rhoads A, Nutt SL, Brown BD, Mostafavi S, Buenrostro JD, Benoist C; Immunological Genome Project. Yoshida H, et al. Among authors: mostafavi s. Cell. 2019 Feb 7;176(4):897-912.e20. doi: 10.1016/j.cell.2018.12.036. Epub 2019 Jan 24. Cell. 2019. PMID: 30686579 Free PMC article.
Mosaic loss of Chromosome Y in aged human microglia.
Vermeulen MC, Pearse R, Young-Pearse T, Mostafavi S. Vermeulen MC, et al. Among authors: mostafavi s. Genome Res. 2022 Oct;32(10):1795-1807. doi: 10.1101/gr.276409.121. Epub 2022 Aug 30. Genome Res. 2022. PMID: 36041859 Free PMC article.
Benchmarking of deep neural networks for predicting personal gene expression from DNA sequence highlights shortcomings.
Sasse A, Ng B, Spiro AE, Tasaki S, Bennett DA, Gaiteri C, De Jager PL, Chikina M, Mostafavi S. Sasse A, et al. Among authors: mostafavi s. bioRxiv [Preprint]. 2023 Sep 28:2023.03.16.532969. doi: 10.1101/2023.03.16.532969. bioRxiv. 2023. Update in: Nat Genet. 2023 Dec;55(12):2060-2064. doi: 10.1038/s41588-023-01524-6 PMID: 36993652 Free PMC article. Updated. Preprint.
Impact of the X Chromosome and sex on regulatory variation.
Kukurba KR, Parsana P, Balliu B, Smith KS, Zappala Z, Knowles DA, Favé MJ, Davis JR, Li X, Zhu X, Potash JB, Weissman MM, Shi J, Kundaje A, Levinson DF, Awadalla P, Mostafavi S, Battle A, Montgomery SB. Kukurba KR, et al. Among authors: mostafavi s. Genome Res. 2016 Jun;26(6):768-77. doi: 10.1101/gr.197897.115. Epub 2016 Apr 21. Genome Res. 2016. PMID: 27197214 Free PMC article.
352 results