Joshi RR - Search Results

1

Design of LNA Analogues Using a Combined Density Functional Theory and Molecular Dynamics Approach for RNA Therapeutics.

Dowerah D, V N Uppuladinne M, Sarma PJ, Biswakarma N, Sonavane UB, Joshi RR, Ray SK, Namsa ND, Deka RC. Dowerah D, et al. Among authors: joshi rr. ACS Omega. 2023 Jun 12;8(25):22382-22405. doi: 10.1021/acsomega.2c07860. eCollection 2023 Jun 27. ACS Omega. 2023. PMID: 37396274 Free PMC article.

2

Study of early events in the protein folding of villin headpiece using molecular dynamics simulation.

Sonavane UB, Ramadugu SK, Joshi RR. Sonavane UB, et al. Among authors: joshi rr. J Biomol Struct Dyn. 2008 Oct;26(2):203-14. doi: 10.1080/07391102.2008.10507236. J Biomol Struct Dyn. 2008. PMID: 18597542

3

Molecular dynamics simulations of cyclohexyl modified peptide nucleic acids (PNA).

Sharma S, Sonavane UB, Joshi RR. Sharma S, et al. Among authors: joshi rr. J Biomol Struct Dyn. 2010 Apr;27(5):663-76. doi: 10.1080/07391102.2010.10508580. J Biomol Struct Dyn. 2010. PMID: 20085383

4

Insights into the folding pathway of the Engrailed Homeodomain protein using replica exchange molecular dynamics simulations.

Koulgi S, Sonavane U, Joshi R. Koulgi S, et al. J Mol Graph Model. 2010 Nov;29(3):481-91. doi: 10.1016/j.jmgm.2010.09.007. Epub 2010 Oct 8. J Mol Graph Model. 2010. PMID: 21035367

5

Microsecond scale replica exchange molecular dynamic simulation of villin headpiece: an insight into the folding landscape.

Jani V, Sonavane UB, Joshi R. Jani V, et al. J Biomol Struct Dyn. 2011 Jun;28(6):845-60. doi: 10.1080/07391102.2011.10508612. J Biomol Struct Dyn. 2011. PMID: 21469746

6

Structural insights into human GPCR protein OA1: a computational perspective.

Ghosh A, Sonavane U, Andhirka SK, Aradhyam GK, Joshi R. Ghosh A, et al. J Mol Model. 2012 May;18(5):2117-33. doi: 10.1007/s00894-011-1228-8. Epub 2011 Sep 22. J Mol Model. 2012. PMID: 21938455

7

MD simulations of HIV-1 RT primer-template complex: effect of modified nucleosides and antisense PNA oligomer.

Uppuladinne MV, Sonavane UB, Joshi RR. Uppuladinne MV, et al. Among authors: joshi rr. J Biomol Struct Dyn. 2013;31(6):539-60. doi: 10.1080/07391102.2012.706076. Epub 2012 Aug 13. J Biomol Struct Dyn. 2013. PMID: 22888964

8

The remarkable efficiency of a Pin-II proteinase inhibitor sans two conserved disulfide bonds is due to enhanced flexibility and hydrogen bond density in the reactive site loop.

Joshi RS, Mishra M, Tamhane VA, Ghosh A, Sonavane U, Suresh CG, Joshi R, Gupta VS, Giri AP. Joshi RS, et al. J Biomol Struct Dyn. 2014;32(1):13-26. doi: 10.1080/07391102.2012.745378. Epub 2012 Dec 20. J Biomol Struct Dyn. 2014. PMID: 23256852

9

QM-MM simulations on p53-DNA complex: a study of hot spot and rescue mutants.

Koulgi S, Achalere A, Sharma N, Sonavane U, Joshi R. Koulgi S, et al. J Mol Model. 2013 Dec;19(12):5545-59. doi: 10.1007/s00894-013-2042-2. Epub 2013 Nov 21. J Mol Model. 2013. PMID: 24253321

10

Multiscale modelling to understand the self-assembly mechanism of human β2-adrenergic receptor in lipid bilayer.

Ghosh A, Sonavane U, Joshi R. Ghosh A, et al. Comput Biol Chem. 2014 Feb;48:29-39. doi: 10.1016/j.compbiolchem.2013.11.002. Epub 2013 Nov 16. Comput Biol Chem. 2014. PMID: 24291490

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