Wilburn DB - Search Results

1

Deep learning from harmonized peptide libraries enables retention time prediction of diverse post translational modifications.

Wilburn DB, Shannon AE, Spicer V, Richards AL, Yeung D, Swaney DL, Krokhin OV, Searle BC. Wilburn DB, et al. bioRxiv [Preprint]. 2023 Jun 2:2023.05.30.542978. doi: 10.1101/2023.05.30.542978. bioRxiv. 2023. PMID: 37398395 Free PMC article. Preprint.

2

CIDer: A Statistical Framework for Interpreting Differences in CID and HCD Fragmentation.

Wilburn DB, Richards AL, Swaney DL, Searle BC. Wilburn DB, et al. J Proteome Res. 2021 Apr 2;20(4):1951-1965. doi: 10.1021/acs.jproteome.0c00964. Epub 2021 Mar 17. J Proteome Res. 2021. PMID: 33729787 Free PMC article.

3

Data-Independent Acquisition Protease-Multiplexing Enables Increased Proteome Sequence Coverage Across Multiple Fragmentation Modes.

Richards AL, Chen KH, Wilburn DB, Stevenson E, Polacco BJ, Searle BC, Swaney DL. Richards AL, et al. Among authors: wilburn db. J Proteome Res. 2022 Apr 1;21(4):1124-1136. doi: 10.1021/acs.jproteome.1c00960. Epub 2022 Mar 2. J Proteome Res. 2022. PMID: 35234472 Free PMC article.

4

Recurrent Co-Option and Recombination of Cytokine and Three Finger Proteins in Multiple Reproductive Tissues Throughout Salamander Evolution.

Wilburn DB, Kunkel CL, Feldhoff RC, Feldhoff PW, Searle BC. Wilburn DB, et al. Front Cell Dev Biol. 2022 Feb 23;10:828947. doi: 10.3389/fcell.2022.828947. eCollection 2022. Front Cell Dev Biol. 2022. PMID: 35281090 Free PMC article.

5

Mass spectral feature analysis of ubiquitylated peptides provides insights into probing the dark ubiquitylome.

Edgington RM, Wilburn DB. Edgington RM, et al. Among authors: wilburn db. bioRxiv [Preprint]. 2024 May 17:2024.05.16.594577. doi: 10.1101/2024.05.16.594577. bioRxiv. 2024. Update in: J Am Soc Mass Spectrom. 2024 Sep 27. doi: 10.1021/jasms.4c00213. PMID: 38798612 Free PMC article. Updated. Preprint.

6

Mass Spectral Feature Analysis of Ubiquitylated Peptides Provides Insights into Probing the Dark Ubiquitylome.

Edgington RM, Wilburn DB. Edgington RM, et al. Among authors: wilburn db. J Am Soc Mass Spectrom. 2024 Sep 27. doi: 10.1021/jasms.4c00213. Online ahead of print. J Am Soc Mass Spectrom. 2024. PMID: 39332818

7

Presence of sodefrin precursor-like factor pheromone candidates in mental and dorsal tail base glands in the plethodontid salamander, Karsenia koreana.

DeBruin JH, Wilburn DB, Feldhoff RC, Staub NL. DeBruin JH, et al. Among authors: wilburn db. PLoS One. 2023 Aug 1;18(8):e0289296. doi: 10.1371/journal.pone.0289296. eCollection 2023. PLoS One. 2023. PMID: 37527281 Free PMC article.

8

BRCA1/BARD1 intrinsically disordered regions facilitate chromatin recruitment and ubiquitylation.

Witus SR, Tuttle LM, Li W, Zelter A, Wang M, Kermoade KE, Wilburn DB, Davis TN, Brzovic PS, Zhao W, Klevit RE. Witus SR, et al. Among authors: wilburn db. EMBO J. 2023 Aug 1;42(15):e113565. doi: 10.15252/embj.2023113565. Epub 2023 Jun 12. EMBO J. 2023. PMID: 37305927 Free PMC article.

9

Scribe: Next Generation Library Searching for DDA Experiments.

Searle BC, Shannon AE, Wilburn DB. Searle BC, et al. Among authors: wilburn db. J Proteome Res. 2023 Feb 3;22(2):482-490. doi: 10.1021/acs.jproteome.2c00672. Epub 2023 Jan 25. J Proteome Res. 2023. PMID: 36695531

10

Domain Expansion and Functional Diversification in Vertebrate Reproductive Proteins.

Rivera AM, Wilburn DB, Swanson WJ. Rivera AM, et al. Among authors: wilburn db. Mol Biol Evol. 2022 May 3;39(5):msac105. doi: 10.1093/molbev/msac105. Mol Biol Evol. 2022. PMID: 35587583 Free PMC article.

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