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Three-color single-molecule localization microscopy in chromatin.
Acosta N, Gong R, Su Y, Frederick J, Medina K, Li WS, Mohammadian K, Almassalha L, Backman V. Acosta N, et al. Among authors: almassalha l. bioRxiv [Preprint]. 2024 Sep 13:2024.09.09.612161. doi: 10.1101/2024.09.09.612161. bioRxiv. 2024. PMID: 39314277 Free PMC article. Preprint.
Formamide denaturation of double-stranded DNA for fluorescence in situ hybridization (FISH) distorts nanoscale chromatin structure.
Shim AR, Frederick J, Pujadas EM, Kuo T, Ye IC, Pritchard JA, Dunton CL, Gonzalez PC, Acosta N, Jain S, Anthony NM, Almassalha LM, Szleifer I, Backman V. Shim AR, et al. Among authors: almassalha lm. PLoS One. 2024 May 28;19(5):e0301000. doi: 10.1371/journal.pone.0301000. eCollection 2024. PLoS One. 2024. PMID: 38805476 Free PMC article.
Nuclear blebs are associated with destabilized chromatin packing domains.
Pujadas Liwag EM, Acosta N, Almassalha LM, Su YP, Gong R, Kanemaki MT, Stephens AD, Backman V. Pujadas Liwag EM, et al. Among authors: almassalha lm. bioRxiv [Preprint]. 2024 Mar 29:2024.03.28.587095. doi: 10.1101/2024.03.28.587095. bioRxiv. 2024. PMID: 38585954 Free PMC article. Preprint.
Depletion of lamins B1 and B2 promotes chromatin mobility and induces differential gene expression by a mesoscale-motion-dependent mechanism.
Pujadas Liwag EM, Wei X, Acosta N, Carter LM, Yang J, Almassalha LM, Jain S, Daneshkhah A, Rao SSP, Seker-Polat F, MacQuarrie KL, Ibarra J, Agrawal V, Aiden EL, Kanemaki MT, Backman V, Adli M. Pujadas Liwag EM, et al. Among authors: almassalha lm. Genome Biol. 2024 Mar 22;25(1):77. doi: 10.1186/s13059-024-03212-y. Genome Biol. 2024. PMID: 38519987 Free PMC article.
DNA density is a better indicator of a nuclear bleb than lamin B loss.
Bunner S, Prince K, Srikrishna K, Pujadas EM, McCarthy AA, Kuklinski A, Jackson O, Pellegrino P, Jagtap S, Eweka I, Lawlor C, Eastin E, Yas G, Aiello J, LaPointe N, von Blucher IS, Hardy J, Chen J, Backman V, Janssen A, Packard M, Dorfman K, Almassalha L, Bahiru MS, Stephens AD. Bunner S, et al. Among authors: almassalha l. bioRxiv [Preprint]. 2024 Feb 7:2024.02.06.579152. doi: 10.1101/2024.02.06.579152. bioRxiv. 2024. PMID: 38370828 Free PMC article. Preprint.
42 results