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Human Immune Cell Epigenomic Signatures in Response to Infectious Diseases and Chemical Exposures.
Wang W, Hariharan M, Bartlett A, Barragan C, Castanon R, Rothenberg V, Song H, Nery J, Aldridge A, Altshul J, Kenworthy M, Ding W, Liu H, Tian W, Zhou J, Chen H, Wei B, Gündüz IB, Norell T, Broderick TJ, McClain MT, Satterwhite LL, Burke TW, Petzold EA, Shen X, Woods CW, Fowler VG Jr, Ruffin F, Panuwet P, Barr DB, Beare JL, Smith AK, Spurbeck RR, Vangeti S, Ramos I, Nudelman G, Sealfon SC, Castellino F, Walley AM, Evans T, Müller F, Greenleaf WJ, Ecker JR. Wang W, et al. Among authors: ruffin f. bioRxiv [Preprint]. 2023 Jun 30:2023.06.29.546792. doi: 10.1101/2023.06.29.546792. bioRxiv. 2023. PMID: 37425926 Free PMC article. Preprint.
Tensor modeling of MRSA bacteremia cytokine and transcriptional patterns reveals coordinated, outcome-associated immunological programs.
Chin JL, Tan ZC, Chan LC, Ruffin F, Parmar R, Ahn R, Taylor SD, Bayer AS, Hoffmann A, Fowler VG Jr, Reed EF, Yeaman MR, Meyer AS; with the MRSA Systems Immunobiology Group. Chin JL, et al. Among authors: ruffin f. PNAS Nexus. 2024 May 4;3(5):pgae185. doi: 10.1093/pnasnexus/pgae185. eCollection 2024 May. PNAS Nexus. 2024. PMID: 38779114 Free PMC article.
Genetic variation of DNA methyltransferase-3A contributes to protection against persistent MRSA bacteremia in patients.
Mba Medie F, Sharma-Kuinkel BK, Ruffin F, Chan LC, Rossetti M, Chang YL, Park LP, Bayer AS, Filler SG, Ahn R, Reed EF, Gjertson D, Yeaman MR, Fowler VG Jr; MRSA Systems Immunobiology Group. Mba Medie F, et al. Among authors: ruffin f. Proc Natl Acad Sci U S A. 2019 Oct 1;116(40):20087-20096. doi: 10.1073/pnas.1909849116. Epub 2019 Sep 16. Proc Natl Acad Sci U S A. 2019. PMID: 31527248 Free PMC article.
A microbiological and genomic perspective of globally collected Escherichia coli from adults hospitalized with invasive E. coli disease.
Arconada Nuin E, Vilken T, Xavier BB, Doua J, Morrow B, Geurtsen J, Go O, Spiessens B, Sarnecki M, Poolman J, Bonten M, Ekkelenkamp M, Lammens C, Goossens H, Glupczynski Y, Van Puyvelde S; COMBACTE-NET Consortium/EXPECT Study Group. Arconada Nuin E, et al. J Antimicrob Chemother. 2024 Sep 3;79(9):2142-2151. doi: 10.1093/jac/dkae182. J Antimicrob Chemother. 2024. PMID: 39001716 Free PMC article.
Integrated transcriptomic analysis reveals immune signatures distinguishing persistent versus resolving outcomes in MRSA bacteremia.
Parmar R, Pickering H, Ahn R, Rossetti M, Gjertson DW, Ruffin F, Chan LC, Fowler VG Jr, Yeaman MR, Reed EF; MRSA Systems Immunology Group. Parmar R, et al. Among authors: ruffin f. Front Immunol. 2024 May 23;15:1373553. doi: 10.3389/fimmu.2024.1373553. eCollection 2024. Front Immunol. 2024. PMID: 38846955 Free PMC article.
70 results