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Page 1
Accelerating bioinformatics implementation in public health.
Libuit KG, Doughty EL, Otieno JR, Ambrosio F, Kapsak CJ, Smith EA, Wright SM, Scribner MR, Petit Iii RA, Mendes CI, Huergo M, Legacki G, Loreth C, Park DJ, Sevinsky JR. Libuit KG, et al. Among authors: sevinsky jr. Microb Genom. 2023 Jul;9(7):mgen001051. doi: 10.1099/mgen.0.001051. Microb Genom. 2023. PMID: 37428142 Free PMC article.
Rapid Lineage Assignment of Severe Acute Respiratory Syndrome Coronavirus 2 Cases through Automated Library Preparation, Sequencing, and Bioinformatic Analysis.
Gorzalski AJ, Kerwin H, Verma S, Hess DC, Sevinsky J, Libuit K, Vlasova-St Louis I, Siao D, Siao L, Buñuel D, Van Hooser S, Pandori MW. Gorzalski AJ, et al. J Mol Diagn. 2023 Apr;25(4):191-196. doi: 10.1016/j.jmoldx.2023.01.005. Epub 2023 Feb 7. J Mol Diagn. 2023. PMID: 36754279 Free PMC article.
GAMBIT (Genomic Approximation Method for Bacterial Identification and Tracking): A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.
Lumpe J, Gumbleton L, Gorzalski A, Libuit K, Varghese V, Lloyd T, Tadros F, Arsimendi T, Wagner E, Stephens C, Sevinsky J, Hess D, Pandori M. Lumpe J, et al. PLoS One. 2023 Feb 16;18(2):e0277575. doi: 10.1371/journal.pone.0277575. eCollection 2023. PLoS One. 2023. PMID: 36795668 Free PMC article.
Pathogen genomics in public health laboratories: successes, challenges, and lessons learned from California's SARS-CoV-2 Whole-Genome Sequencing Initiative, California COVIDNet.
Smith EA, Libuit KG, Kapsak CJ, Scribner MR, Wright SM, Bell J, Morales C, Crumpler M, Messenger S, Hacker JK, Ledin K, Glaser C, Jacobson K, Sevinsky JR, Wadford DA. Smith EA, et al. Among authors: sevinsky jr. Microb Genom. 2023 Jun;9(6):mgen001027. doi: 10.1099/mgen.0.001027. Microb Genom. 2023. PMID: 37267020 Free PMC article.
Development of an amplicon-based sequencing approach in response to the global emergence of mpox.
Chen NFG, Chaguza C, Gagne L, Doucette M, Smole S, Buzby E, Hall J, Ash S, Harrington R, Cofsky S, Clancy S, Kapsak CJ, Sevinsky J, Libuit K, Park DJ, Hemarajata P, Garrigues JM, Green NM, Sierra-Patev S, Carpenter-Azevedo K, Huard RC, Pearson C, Incekara K, Nishimura C, Huang JP, Gagnon E, Reever E, Razeq J, Muyombwe A, Borges V, Ferreira R, Sobral D, Duarte S, Santos D, Vieira L, Gomes JP, Aquino C, Savino IM, Felton K, Bajwa M, Hayward N, Miller H, Naumann A, Allman R, Greer N, Fall A, Mostafa HH, McHugh MP, Maloney DM, Dewar R, Kenicer J, Parker A, Mathers K, Wild J, Cotton S, Templeton KE, Churchwell G, Lee PA, Pedrosa M, McGruder B, Schmedes S, Plumb MR, Wang X, Barcellos RB, Godinho FMS, Salvato RS, Ceniseros A, Breban MI, Grubaugh ND, Gallagher GR, Vogels CBF. Chen NFG, et al. PLoS Biol. 2023 Jun 13;21(6):e3002151. doi: 10.1371/journal.pbio.3002151. eCollection 2023 Jun. PLoS Biol. 2023. PMID: 37310918 Free PMC article.
The use of whole-genome sequencing and development of bioinformatics to monitor overlapping outbreaks of Candida auris in southern Nevada.
Gorzalski A, Ambrosio FJ 3rd, Massic L, Scribner MR, Siao DD, Hua C, Dykema P, Schneider E, Njoku C, Libuit K, Sevinsky JR, Van Hooser S, Pandori M, Hess D. Gorzalski A, et al. Among authors: sevinsky jr. Front Public Health. 2023 Jul 13;11:1198189. doi: 10.3389/fpubh.2023.1198189. eCollection 2023. Front Public Health. 2023. PMID: 37522005 Free PMC article.
TheiaEuk: a species-agnostic bioinformatics workflow for fungal genomic characterization.
Ambrosio FJ 3rd, Scribner MR, Wright SM, Otieno JR, Doughty EL, Gorzalski A, Siao DD, Killian S, Hua C, Schneider E, Tran M, Varghese V, Libuit KG, Pandori M, Sevinsky JR, Hess D. Ambrosio FJ 3rd, et al. Among authors: sevinsky jr. Front Public Health. 2023 Aug 1;11:1198213. doi: 10.3389/fpubh.2023.1198213. eCollection 2023. Front Public Health. 2023. PMID: 37593727 Free PMC article.
Implementation of California COVIDNet - a multi-sector collaboration for statewide SARS-CoV-2 genomic surveillance.
Wadford DA, Baumrind N, Baylis EF, Bell JM, Bouchard EL, Crumpler M, Foote EM, Gilliam S, Glaser CA, Hacker JK, Ledin K, Messenger SL, Morales C, Smith EA, Sevinsky JR, Corbett-Detig RB, DeRisi J, Jacobson K. Wadford DA, et al. Among authors: sevinsky jr. Front Public Health. 2023 Oct 23;11:1249614. doi: 10.3389/fpubh.2023.1249614. eCollection 2023. Front Public Health. 2023. PMID: 37937074 Free PMC article.
26 results