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Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index.
Pandey P, Almodaresi F, Bender MA, Ferdman M, Johnson R, Patro R. Pandey P, et al. Among authors: patro r. Cell Syst. 2018 Aug 22;7(2):201-207.e4. doi: 10.1016/j.cels.2018.05.021. Epub 2018 Jun 20. Cell Syst. 2018. PMID: 29936185 Free PMC article.
Squeakr: an exact and approximate k-mer counting system.
Pandey P, Bender MA, Johnson R, Patro R, Berger B. Pandey P, et al. Among authors: patro r. Bioinformatics. 2018 Feb 15;34(4):568-575. doi: 10.1093/bioinformatics/btx636. Bioinformatics. 2018. PMID: 29444235
A computational method for designing diverse linear epitopes including citrullinated peptides with desired binding affinities to intravenous immunoglobulin.
Patro R, Norel R, Prill RJ, Saez-Rodriguez J, Lorenz P, Steinbeck F, Ziems B, Luštrek M, Barbarini N, Tiengo A, Bellazzi R, Thiesen HJ, Stolovitzky G, Kingsford C. Patro R, et al. BMC Bioinformatics. 2016 Apr 8;17:155. doi: 10.1186/s12859-016-1008-7. BMC Bioinformatics. 2016. PMID: 27059896 Free PMC article.
Tximeta: Reference sequence checksums for provenance identification in RNA-seq.
Love MI, Soneson C, Hickey PF, Johnson LK, Pierce NT, Shepherd L, Morgan M, Patro R. Love MI, et al. Among authors: patro r. PLoS Comput Biol. 2020 Feb 25;16(2):e1007664. doi: 10.1371/journal.pcbi.1007664. eCollection 2020 Feb. PLoS Comput Biol. 2020. PMID: 32097405 Free PMC article.
75 results