Ou YY - Search Results

1

mCNN-glucose: Identifying families of glucose transporters using a deep convolutional neural network based on multiple-scanning windows.

Shah SMA, Rafi M, Malik MS, Malik SA, Ou YY. Shah SMA, et al. Among authors: ou yy. Int J Biol Macromol. 2025 Jan 4;294:139522. doi: 10.1016/j.ijbiomac.2025.139522. Online ahead of print. Int J Biol Macromol. 2025. PMID: 39761890

2

ATP_mCNN: Predicting ATP binding sites through pretrained language models and multi-window neural networks.

Le VT, Malik MS, Lin YJ, Liu YC, Chang YY, Ou YY. Le VT, et al. Among authors: ou yy. Comput Biol Med. 2024 Dec 8;185:109541. doi: 10.1016/j.compbiomed.2024.109541. Online ahead of print. Comput Biol Med. 2024. PMID: 39653625

3

MCNN-AAPT: accurate classification and functional prediction of amino acid and peptide transporters in secondary active transporters using protein language models and multi-window deep learning.

Malik MS, Le VT, Shah SMA, Ou YY. Malik MS, et al. Among authors: ou yy. J Biomol Struct Dyn. 2024 Nov 22:1-10. doi: 10.1080/07391102.2024.2431664. Online ahead of print. J Biomol Struct Dyn. 2024. PMID: 39576667

4

DeepNeoAG: Neoantigen epitope prediction from melanoma antigens using a synergistic deep learning model combining protein language models and multi-window scanning convolutional neural networks.

Chuang CC, Liu YC, Ou YY. Chuang CC, et al. Among authors: ou yy. Int J Biol Macromol. 2024 Nov;281(Pt 1):136252. doi: 10.1016/j.ijbiomac.2024.136252. Epub 2024 Oct 2. Int J Biol Macromol. 2024. PMID: 39366619

5

VesiMCNN: Using pre-trained protein language models and multiple window scanning convolutional neural networks to identify vesicular transport proteins.

Le VT, Tseng YH, Liu YC, Malik MS, Ou YY. Le VT, et al. Among authors: ou yy. Int J Biol Macromol. 2024 Sep 26;280(Pt 3):136048. doi: 10.1016/j.ijbiomac.2024.136048. Online ahead of print. Int J Biol Macromol. 2024. PMID: 39332561

6

Deciphering the Language of Protein-DNA Interactions: A Deep Learning Approach Combining Contextual Embeddings and Multi-Scale Sequence Modeling.

Liu YC, Lin YJ, Chang YY, Chuang CC, Ou YY. Liu YC, et al. Among authors: ou yy. J Mol Biol. 2024 Nov 15;436(22):168769. doi: 10.1016/j.jmb.2024.168769. Epub 2024 Aug 29. J Mol Biol. 2024. PMID: 39214282

7

MCNN_MC: Computational Prediction of Mitochondrial Carriers and Investigation of Bongkrekic Acid Toxicity Using Protein Language Models and Convolutional Neural Networks.

Malik MS, Chang YY, Liu YC, Le VT, Ou YY. Malik MS, et al. Among authors: ou yy. J Chem Inf Model. 2024 Dec 23;64(24):9125-9134. doi: 10.1021/acs.jcim.4c00961. Epub 2024 Aug 12. J Chem Inf Model. 2024. PMID: 39133248 Free PMC article.

8

ProtTrans and multi-window scanning convolutional neural networks for the prediction of protein-peptide interaction sites.

Le VT, Zhan ZJ, Vu TT, Malik MS, Ou YY. Le VT, et al. Among authors: ou yy. J Mol Graph Model. 2024 Jul;130:108777. doi: 10.1016/j.jmgm.2024.108777. Epub 2024 Apr 17. J Mol Graph Model. 2024. PMID: 38642500

9

DeepPLM_mCNN: An approach for enhancing ion channel and ion transporter recognition by multi-window CNN based on features from pre-trained language models.

Le VT, Malik MS, Tseng YH, Lee YC, Huang CI, Ou YY. Le VT, et al. Among authors: ou yy. Comput Biol Chem. 2024 Jun;110:108055. doi: 10.1016/j.compbiolchem.2024.108055. Epub 2024 Mar 20. Comput Biol Chem. 2024. PMID: 38555810

10

Ultrasound-guided acupotomy release for treating common peroneal nerve entrapment syndrome: a case description.

Ou YY, Li YN, Sun XJ, Li SL. Ou YY, et al. Quant Imaging Med Surg. 2024 Mar 15;14(3):2704-2707. doi: 10.21037/qims-23-1277. Epub 2024 Feb 28. Quant Imaging Med Surg. 2024. PMID: 38545068 Free PMC article. No abstract available.

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