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Page 1
Learning the fitness dynamics of pathogens from phylogenies.
Lefrancq N, Duret L, Bouchez V, Brisse S, Parkhill J, Salje H. Lefrancq N, et al. Nature. 2025 Jan;637(8046):683-690. doi: 10.1038/s41586-024-08309-9. Epub 2025 Jan 1. Nature. 2025. PMID: 39743587 Free PMC article.
Geographical migration and fitness dynamics of Streptococcus pneumoniae.
Belman S, Lefrancq N, Nzenze S, Downs S, du Plessis M, Lo SW; Global Pneumococcal Sequencing Consortium; McGee L, Madhi SA, von Gottberg A, Bentley SD, Salje H. Belman S, et al. Among authors: lefrancq n. Nature. 2024 Jul;631(8020):386-392. doi: 10.1038/s41586-024-07626-3. Epub 2024 Jul 3. Nature. 2024. PMID: 38961295 Free PMC article.
The Genetic Diversity of Nipah Virus Across Spatial Scales.
Cortes-Azuero O, Lefrancq N, Nikolay B, McKee C, Cappelle J, Hul V, Ou TP, Hoem T, Lemey P, Rahman MZ, Islam A, Gurley ES, Duong V, Salje H. Cortes-Azuero O, et al. Among authors: lefrancq n. J Infect Dis. 2024 Dec 16;230(6):e1235-e1244. doi: 10.1093/infdis/jiae221. J Infect Dis. 2024. PMID: 38682164 Free PMC article.
Antigenic distance between primary and secondary dengue infections correlates with disease risk.
Wang L, Huang AT, Katzelnick LC, Lefrancq N, Escoto AC, Duret L, Chowdhury N, Jarman R, Conte MA, Berry IM, Fernandez S, Klungthong C, Thaisomboonsuk B, Suntarattiwong P, Vandepitte W, Whitehead SS, Cauchemez S, Cummings DAT, Salje H. Wang L, et al. Among authors: lefrancq n. Sci Transl Med. 2024 Apr 24;16(744):eadk3259. doi: 10.1126/scitranslmed.adk3259. Epub 2024 Apr 24. Sci Transl Med. 2024. PMID: 38657027
Antigenic diversity and dengue disease risk.
Wang L, Huang AT, Katzelnick LC, Lefrancq N, Escoto AC, Duret L, Chowdhury N, Jarman R, Conte MA, Berry IM, Fernandez S, Klungthong C, Thaisomboonsuk B, Suntarattiwong P, Vandepitte W, Whitehead S, Cauchemez S, Cummings DAT, Salje H. Wang L, et al. Among authors: lefrancq n. Res Sq [Preprint]. 2023 Aug 2:rs.3.rs-3214507. doi: 10.21203/rs.3.rs-3214507/v1. Res Sq. 2023. PMID: 37577717 Free PMC article. Preprint.
The genetic diversity of Nipah virus across spatial scales.
Azuero OC, Lefrancq N, Nikolay B, McKee C, Cappelle J, Hul V, Ou TP, Hoem T, Lemey P, Rahman MZ, Islam A, Gurley ES, Duong V, Salje H. Azuero OC, et al. Among authors: lefrancq n. medRxiv [Preprint]. 2023 Oct 4:2023.07.14.23292668. doi: 10.1101/2023.07.14.23292668. medRxiv. 2023. Update in: J Infect Dis. 2024 Dec 16;230(6):e1235-e1244. doi: 10.1093/infdis/jiae221 PMID: 37502973 Free PMC article. Updated. Preprint.
Geographic migration and vaccine-induced fitness changes of Streptococcus pneumoniae.
Belman S, Lefrancq N, Nzenze S, Downs S, du Plessis M, Lo S; Global Pneumococcal Sequencing Consortium; McGee L, Madhi SA, von Gottberg A, Bentley SD, Salje H. Belman S, et al. Among authors: lefrancq n. bioRxiv [Preprint]. 2023 Jan 18:2023.01.18.524577. doi: 10.1101/2023.01.18.524577. bioRxiv. 2023. PMID: 36711799 Free PMC article. Preprint.
Ongoing diphtheria outbreak in Yemen: a cross-sectional and genomic epidemiology study.
Badell E, Alharazi A, Criscuolo A, Almoayed KAA, Lefrancq N, Bouchez V, Guglielmini J, Hennart M, Carmi-Leroy A, Zidane N, Pascal-Perrigault M, Lebreton M, Martini H, Salje H, Toubiana J, Dureab F, Dhabaan G, Brisse S; NCPHL diphtheria outbreak working group. Badell E, et al. Among authors: lefrancq n. Lancet Microbe. 2021 Aug;2(8):e386-e396. doi: 10.1016/S2666-5247(21)00094-X. Epub 2021 May 26. Lancet Microbe. 2021. PMID: 35544196 Free article.
Global spatial dynamics and vaccine-induced fitness changes of Bordetella pertussis.
Lefrancq N, Bouchez V, Fernandes N, Barkoff AM, Bosch T, Dalby T, Åkerlund T, Darenberg J, Fabianova K, Vestrheim DF, Fry NK, González-López JJ, Gullsby K, Habington A, He Q, Litt D, Martini H, Piérard D, Stefanelli P, Stegger M, Zavadilova J, Armatys N, Landier A, Guillot S, Hong SL, Lemey P, Parkhill J, Toubiana J, Cauchemez S, Salje H, Brisse S. Lefrancq N, et al. Sci Transl Med. 2022 Apr 27;14(642):eabn3253. doi: 10.1126/scitranslmed.abn3253. Epub 2022 Apr 27. Sci Transl Med. 2022. PMID: 35476597
17 results