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Ten quick tips for harnessing the power of ChatGPT in computational biology.
Lubiana T, Lopes R, Medeiros P, Silva JC, Goncalves ANA, Maracaja-Coutinho V, Nakaya HI. Lubiana T, et al. Among authors: nakaya hi. PLoS Comput Biol. 2023 Aug 10;19(8):e1011319. doi: 10.1371/journal.pcbi.1011319. eCollection 2023 Aug. PLoS Comput Biol. 2023. PMID: 37561669 Free PMC article. No abstract available.
CEMiTool: a Bioconductor package for performing comprehensive modular co-expression analyses.
Russo PST, Ferreira GR, Cardozo LE, Bürger MC, Arias-Carrasco R, Maruyama SR, Hirata TDC, Lima DS, Passos FM, Fukutani KF, Lever M, Silva JS, Maracaja-Coutinho V, Nakaya HI. Russo PST, et al. Among authors: nakaya hi. BMC Bioinformatics. 2018 Feb 20;19(1):56. doi: 10.1186/s12859-018-2053-1. BMC Bioinformatics. 2018. PMID: 29458351 Free PMC article.
Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci.
Amaral PP, Leonardi T, Han N, Viré E, Gascoigne DK, Arias-Carrasco R, Büscher M, Pandolfini L, Zhang A, Pluchino S, Maracaja-Coutinho V, Nakaya HI, Hemberg M, Shiekhattar R, Enright AJ, Kouzarides T. Amaral PP, et al. Among authors: nakaya hi. Genome Biol. 2018 Mar 15;19(1):32. doi: 10.1186/s13059-018-1405-5. Genome Biol. 2018. PMID: 29540241 Free PMC article.
webCEMiTool: Co-expression Modular Analysis Made Easy.
Cardozo LE, Russo PST, Gomes-Correia B, Araujo-Pereira M, Sepúlveda-Hermosilla G, Maracaja-Coutinho V, Nakaya HI. Cardozo LE, et al. Among authors: nakaya hi. Front Genet. 2019 Mar 6;10:146. doi: 10.3389/fgene.2019.00146. eCollection 2019. Front Genet. 2019. PMID: 30894872 Free PMC article.
Systems analysis of subjects acutely infected with the Chikungunya virus.
Soares-Schanoski A, Baptista Cruz N, de Castro-Jorge LA, de Carvalho RVH, Santos CAD, Rós ND, Oliveira Ú, Costa DD, Santos CLSD, Cunha MDP, Oliveira MLS, Alves JC, Océa RALC, Ribeiro DR, Gonçalves ANA, Gonzalez-Dias P, Suhrbier A, Zanotto PMA, Azevedo IJ, Zamboni DS, Almeida RP, Ho PL, Kalil J, Nishiyama MY Junior, Nakaya HI. Soares-Schanoski A, et al. Among authors: nakaya hi. PLoS Pathog. 2019 Jun 18;15(6):e1007880. doi: 10.1371/journal.ppat.1007880. eCollection 2019 Jun. PLoS Pathog. 2019. PMID: 31211814 Free PMC article. Clinical Trial.
Long noncoding RNAs are involved in multiple immunological pathways in response to vaccination.
de Lima DS, Cardozo LE, Maracaja-Coutinho V, Suhrbier A, Mane K, Jeffries D, Silveira ELV, Amaral PP, Rappuoli R, de Silva TI, Nakaya HI. de Lima DS, et al. Among authors: nakaya hi. Proc Natl Acad Sci U S A. 2019 Aug 20;116(34):17121-17126. doi: 10.1073/pnas.1822046116. Epub 2019 Aug 9. Proc Natl Acad Sci U S A. 2019. PMID: 31399544 Free PMC article.
181 results