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Text mining biomedical literature to identify extremely unbalanced data for digital epidemiology and systematic reviews: dataset and methods for a SARS-CoV-2 genomic epidemiology study.
Weissenbacher D, O'Connor K, Klein A, Golder S, Flores I, Elyaderani A, Scotch M, Gonzalez-Hernandez G. Weissenbacher D, et al. Among authors: scotch m. medRxiv [Preprint]. 2023 Aug 4:2023.07.29.23293370. doi: 10.1101/2023.07.29.23293370. medRxiv. 2023. PMID: 37577535 Free PMC article. Preprint.
Genomic epidemiology reveals the dominance of Hennepin County in transmission of SARS-CoV-2 in Minnesota from 2020-2022.
Scotch M, Lauer K, Wieben ED, Cherukuri Y, Cunningham JM, Klee EW, Harrington JJ, Lau JS, McDonough SJ, Mutawe M, O'Horo JC, Rentmeester CE, Schlicher NR, White VT, Schneider SK, Vedell PT, Wang X, Yao JD, Pritt BS, Norgan AP. Scotch M, et al. medRxiv [Preprint]. 2023 Apr 26:2022.07.24.22277978. doi: 10.1101/2022.07.24.22277978. medRxiv. 2023. Update in: mSphere. 2023 Dec 20;8(6):e0023223. doi: 10.1128/msphere.00232-23 PMID: 35923324 Free PMC article. Updated. Preprint.
Influenza vaccine effectiveness against medically attended outpatient illness, United States, 2023-24 season.
Chung JR, Price AM, Zimmerman RK, Moehling Geffel K, House SL, Curley T, Wernli KJ, Phillips CH, Martin ET, Vaughn IA, Murugan V, Scotch M, Saade EA, Faryar KA, Gaglani M, Ramm JD, Williams OL, Walter EB, Kirby M, Keong LM, Kondor R, Ellington SR, Flannery B; US Flu VE Network Investigators. Chung JR, et al. Among authors: scotch m. Clin Infect Dis. 2025 Jan 6:ciae658. doi: 10.1093/cid/ciae658. Online ahead of print. Clin Infect Dis. 2025. PMID: 39761230
Influenza vaccine effectiveness against medically attended outpatient illness, United States, 2023-24 season.
Chung JR, Price AM, Zimmerman RK, Geffel KM, House SL, Curley T, Wernli KJ, Phillips CH, Martin ET, Vaughn IA, Murugan V, Scotch M, Saade EA, Faryar KA, Gaglani M, Ramm JD, Williams OL, Walter EB, Kirby M, Keong LM, Kondor R, Ellington SR, Flannery B; US Flu VE Network Investigators. Chung JR, et al. Among authors: scotch m. medRxiv [Preprint]. 2024 Oct 30:2024.10.29.24316377. doi: 10.1101/2024.10.29.24316377. medRxiv. 2024. PMID: 39574872 Free PMC article. Preprint.
Adenovirus 41 diversity in Arizona (USA) using wastewater-based epidemiology, long-range PCR, and pathogen sequencing between October 2019 and March 2020.
Faleye TOC, Skidmore P, Elyaderani A, Adhikari S, Kaiser N, Smith A, Yanez A, Perleberg T, Driver EM, Halden RU, Varsani A, Scotch M. Faleye TOC, et al. Among authors: scotch m. Epidemiol Infect. 2024 Nov 18;152:e142. doi: 10.1017/S095026882400133X. Epidemiol Infect. 2024. PMID: 39552136 Free PMC article.
Nine Rhizobium phage genomes recovered from wastewater in Tempe, AZ, October 2019-March 2020.
Bermudez-Rivera B, Hampton B, Wheeler C, Vargas J, Swaminathan S, Driver EM, Halden RU, Varsani A, Scotch M, Faleye TOC. Bermudez-Rivera B, et al. Among authors: scotch m. Microbiol Resour Announc. 2024 Oct 10;13(10):e0068024. doi: 10.1128/mra.00680-24. Epub 2024 Sep 19. Microbiol Resour Announc. 2024. PMID: 39297635 Free PMC article.
110 results