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Analysis and visualization of quantitative proteomics data using FragPipe-Analyst.
Hsiao Y, Zhang H, Li GX, Deng Y, Yu F, Kahrood HV, Steele JR, Schittenhelm RB, Nesvizhskii AI. Hsiao Y, et al. Among authors: nesvizhskii ai. bioRxiv [Preprint]. 2024 Mar 10:2024.03.05.583643. doi: 10.1101/2024.03.05.583643. bioRxiv. 2024. Update in: J Proteome Res. 2024 Oct 4;23(10):4303-4315. doi: 10.1021/acs.jproteome.4c00294 PMID: 38496650 Free PMC article. Updated. Preprint.
Quantitative proteome-wide O-glycoproteomics analysis with FragPipe.
Polasky DA, Lu L, Yu F, Li K, Shortreed MR, Smith LM, Nesvizhskii AI. Polasky DA, et al. Among authors: nesvizhskii ai. Anal Bioanal Chem. 2024 Jun 15:10.1007/s00216-024-05382-x. doi: 10.1007/s00216-024-05382-x. Online ahead of print. Anal Bioanal Chem. 2024. PMID: 38877149
Mapping Nanoscale-To-Single-Cell Phosphoproteomic Landscape by Chip-DIA.
Muneer G, Gebreyesus ST, Chen CS, Lee TT, Yu F, Lin CA, Hsieh MS, Nesvizhskii AI, Ho CC, Yu SL, Tu HL, Chen YJ. Muneer G, et al. Among authors: nesvizhskii ai. Adv Sci (Weinh). 2024 Oct 14:e2402421. doi: 10.1002/advs.202402421. Online ahead of print. Adv Sci (Weinh). 2024. PMID: 39401432
Mass spectrometric profiling of HLA-B44 peptidomes provides evidence for tapasin-mediated tryptophan editing.
Kaur A, Surnilla A, Zaitouna AJ, Basrur V, Mumphrey MB, Grigorova I, Cieslik M, Carrington M, Nesvizhskii AI, Raghavan M. Kaur A, et al. Among authors: nesvizhskii ai. bioRxiv [Preprint]. 2023 Feb 27:2023.02.26.530125. doi: 10.1101/2023.02.26.530125. bioRxiv. 2023. Update in: J Immunol. 2023 Nov 1;211(9):1298-1307. doi: 10.4049/jimmunol.2300232 PMID: 36909546 Free PMC article. Updated. Preprint.
232 results