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A STRP-ed definition of Structured Tandem Repeats in Proteins.
Monzon AM, Arrías PN, Elofsson A, Mier P, Andrade-Navarro MA, Bevilacqua M, Clementel D, Bateman A, Hirsh L, Fornasari MS, Parisi G, Piovesan D, Kajava AV, Tosatto SCE. Monzon AM, et al. Among authors: hirsh l. J Struct Biol. 2023 Dec;215(4):108023. doi: 10.1016/j.jsb.2023.108023. Epub 2023 Aug 29. J Struct Biol. 2023. PMID: 37652396 Free article.
Classification of β-hairpin repeat proteins.
Roche DB, Viet PD, Bakulina A, Hirsh L, Tosatto SCE, Kajava AV. Roche DB, et al. Among authors: hirsh l. J Struct Biol. 2018 Feb;201(2):130-138. doi: 10.1016/j.jsb.2017.10.001. Epub 2017 Oct 7. J Struct Biol. 2018. PMID: 29017817
The Pfam protein families database in 2019.
El-Gebali S, Mistry J, Bateman A, Eddy SR, Luciani A, Potter SC, Qureshi M, Richardson LJ, Salazar GA, Smart A, Sonnhammer ELL, Hirsh L, Paladin L, Piovesan D, Tosatto SCE, Finn RD. El-Gebali S, et al. Among authors: hirsh l. Nucleic Acids Res. 2019 Jan 8;47(D1):D427-D432. doi: 10.1093/nar/gky995. Nucleic Acids Res. 2019. PMID: 30357350 Free PMC article.
Revenant: a database of resurrected proteins.
Carletti MS, Monzon AM, Garcia-Rios E, Benitez G, Hirsh L, Fornasari MS, Parisi G. Carletti MS, et al. Among authors: hirsh l. Database (Oxford). 2020 Jan 1;2020:baaa031. doi: 10.1093/database/baaa031. Database (Oxford). 2020. PMID: 32400867 Free PMC article.
RepeatsDB in 2021: improved data and extended classification for protein tandem repeat structures.
Paladin L, Bevilacqua M, Errigo S, Piovesan D, Mičetić I, Necci M, Monzon AM, Fabre ML, Lopez JL, Nilsson JF, Rios J, Menna PL, Cabrera M, Buitron MG, Kulik MG, Fernandez-Alberti S, Fornasari MS, Parisi G, Lagares A, Hirsh L, Andrade-Navarro MA, Kajava AV, Tosatto SCE. Paladin L, et al. Among authors: hirsh l. Nucleic Acids Res. 2021 Jan 8;49(D1):D452-D457. doi: 10.1093/nar/gkaa1097. Nucleic Acids Res. 2021. PMID: 33237313 Free PMC article.
81 results