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microGalaxy: A gateway to tools, workflows, and training for reproducible and FAIR analysis of microbial data.
Nasr E, Amato P, Bhardwaj A, Blankenberg D, Brites D, Cumbo F, Do K, Ferrari E, Griffin TJ, Grüning B, Hiltemann S, Jagtap P, Mehta S, Métris K, Momin S, Oba A, Pavloudi C, Pechlivanis N, Péguilhan R, Psomopoulos F, Rosic N, Schatz MC, Schiml VC, Siguret C, Soranzo N, Stubbs A, van Heusden P, Vohra M; microGalaxy Community; Zierep P, Batut B. Nasr E, et al. Among authors: pavloudi c. bioRxiv [Preprint]. 2024 Dec 27:2024.12.23.629682. doi: 10.1101/2024.12.23.629682. bioRxiv. 2024. PMID: 39764050 Free PMC article. Preprint.
Seasonality of primary production explains the richness of pioneering benthic communities.
Cecchetto M, Dettai A, Gallut C, Obst M, Kuklinski P, Balazy P, Chelchowski M, Małachowicz M, Poćwierz-Kotus A, Zbawicka M, Reiss H, Eléaume MP, Ficetola GF, Pavloudi C, Exter K, Fontaneto D, Schiaparelli S. Cecchetto M, et al. Among authors: pavloudi c. Nat Commun. 2024 Sep 27;15(1):8340. doi: 10.1038/s41467-024-52673-z. Nat Commun. 2024. PMID: 39333524 Free PMC article.
Microbial diversity in four Mediterranean irciniid sponges.
Skaraki K, Pavloudi C, Dailianis T, Lagnel J, Pantazidou A, Magoulas A, Kotoulas G. Skaraki K, et al. Among authors: pavloudi c. Biodivers Data J. 2024 Jan 19;12:e114809. doi: 10.3897/BDJ.12.e114809. eCollection 2024. Biodivers Data J. 2024. PMID: 38283142 Free PMC article.
metaGOflow: a workflow for the analysis of marine Genomic Observatories shotgun metagenomics data.
Zafeiropoulos H, Beracochea M, Ninidakis S, Exter K, Potirakis A, De Moro G, Richardson L, Corre E, Machado J, Pafilis E, Kotoulas G, Santi I, Finn RD, Cox CJ, Pavloudi C. Zafeiropoulos H, et al. Among authors: pavloudi c. Gigascience. 2022 Dec 28;12:giad078. doi: 10.1093/gigascience/giad078. Epub 2023 Oct 18. Gigascience. 2022. PMID: 37850871 Free PMC article.
30 results