Varoquaux N - Search Results

1

Diversification of Ubiquinone Biosynthesis via Gene Duplications, Transfers, Losses, and Parallel Evolution.

Kazemzadeh K, Pelosi L, Chenal C, Chobert SC, Hajj Chehade M, Jullien M, Flandrin L, Schmitt W, He Q, Bouvet E, Jarzynka M, Varoquaux N, Junier I, Pierrel F, Abby SS. Kazemzadeh K, et al. Among authors: varoquaux n. Mol Biol Evol. 2023 Oct 4;40(10):msad219. doi: 10.1093/molbev/msad219. Mol Biol Evol. 2023. PMID: 37788637 Free PMC article.

2

Computational Tools for the Multiscale Analysis of Hi-C Data in Bacterial Chromosomes.

Varoquaux N, Lioy VS, Boccard F, Junier I. Varoquaux N, et al. Methods Mol Biol. 2022;2301:197-207. doi: 10.1007/978-1-0716-1390-0_10. Methods Mol Biol. 2022. PMID: 34415537

3

Dynamics of the compartmentalized Streptomyces chromosome during metabolic differentiation.

Lioy VS, Lorenzi JN, Najah S, Poinsignon T, Leh H, Saulnier C, Aigle B, Lautru S, Thibessard A, Lespinet O, Leblond P, Jaszczyszyn Y, Gorrichon K, Varoquaux N, Junier I, Boccard F, Pernodet JL, Bury-Moné S. Lioy VS, et al. Among authors: varoquaux n. Nat Commun. 2021 Sep 1;12(1):5221. doi: 10.1038/s41467-021-25462-1. Nat Commun. 2021. PMID: 34471117 Free PMC article.

4

Genome-resolved metagenomics reveals role of iron metabolism in drought-induced rhizosphere microbiome dynamics.

Xu L, Dong Z, Chiniquy D, Pierroz G, Deng S, Gao C, Diamond S, Simmons T, Wipf HM, Caddell D, Varoquaux N, Madera MA, Hutmacher R, Deutschbauer A, Dahlberg JA, Guerinot ML, Purdom E, Banfield JF, Taylor JW, Lemaux PG, Coleman-Derr D. Xu L, et al. Among authors: varoquaux n. Nat Commun. 2021 May 28;12(1):3209. doi: 10.1038/s41467-021-23553-7. Nat Commun. 2021. PMID: 34050180 Free PMC article.

5

Inference of 3D genome architecture by modeling overdispersion of Hi-C data.

Varoquaux N, Noble WS, Vert JP. Varoquaux N, et al. Bioinformatics. 2023 Jan 1;39(1):btac838. doi: 10.1093/bioinformatics/btac838. Bioinformatics. 2023. PMID: 36594573 Free PMC article.

6

Community, Time, and (Con)text: A Dynamical Systems Analysis of Online Communication and Community Health among Open-Source Software Communities.

Paxton A, Varoquaux N, Holdgraf C, Geiger RS. Paxton A, et al. Among authors: varoquaux n. Cogn Sci. 2022 May;46(5):e13134. doi: 10.1111/cogs.13134. Cogn Sci. 2022. PMID: 35579857 Free PMC article.

7

Successional adaptive strategies revealed by correlating arbuscular mycorrhizal fungal abundance with host plant gene expression.

Gao C, Courty PE, Varoquaux N, Cole B, Montoya L, Xu L, Purdom E, Vogel J, Hutmacher RB, Dahlberg JA, Coleman-Derr D, Lemaux PG, Taylor JW. Gao C, et al. Among authors: varoquaux n. Mol Ecol. 2023 May;32(10):2674-2687. doi: 10.1111/mec.16343. Epub 2022 Jan 27. Mol Ecol. 2023. PMID: 35000239

8

Dynamic quinone repertoire accompanied the diversification of energy metabolism in Pseudomonadota.

Chobert SC, Roger-Margueritat M, Flandrin L, Berraies S, Lefèvre CT, Pelosi L, Junier I, Varoquaux N, Pierrel F, Abby SS. Chobert SC, et al. Among authors: varoquaux n. ISME J. 2024 Dec 18:wrae253. doi: 10.1093/ismejo/wrae253. Online ahead of print. ISME J. 2024. PMID: 39693360 Free article.

9

Unveiling the Links Between Peptide Identification and Differential Analysis FDR Controls by Means of a Practical Introduction to Knockoff Filters.

Etourneau L, Varoquaux N, Burger T. Etourneau L, et al. Among authors: varoquaux n. Methods Mol Biol. 2023;2426:1-24. doi: 10.1007/978-1-0716-1967-4_1. Methods Mol Biol. 2023. PMID: 36308682

10

Cell Wall Compositions of Sorghum bicolor Leaves and Roots Remain Relatively Constant Under Drought Conditions.

Scavuzzo-Duggan T, Varoquaux N, Madera M, Vogel JP, Dahlberg J, Hutmacher R, Belcher M, Ortega J, Coleman-Derr D, Lemaux P, Purdom E, Scheller HV. Scavuzzo-Duggan T, et al. Among authors: varoquaux n. Front Plant Sci. 2021 Nov 12;12:747225. doi: 10.3389/fpls.2021.747225. eCollection 2021. Front Plant Sci. 2021. PMID: 34868130 Free PMC article.

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