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The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms.
Walker K, Kalra D, Lowdon R, Chen G, Molik D, Soto DC, Dabbaghie F, Khleifat AA, Mahmoud M, Paulin LF, Raza MS, Pfeifer SP, Agustinho DP, Aliyev E, Avdeyev P, Barrozo ER, Behera S, Billingsley K, Chong LC, Choubey D, De Coster W, Fu Y, Gener AR, Hefferon T, Henke DM, Höps W, Illarionova A, Jochum MD, Jose M, Kesharwani RK, Kolora SRR, Kubica J, Lakra P, Lattimer D, Liew CS, Lo BW, Lo C, Lötter A, Majidian S, Mendem SK, Mondal R, Ohmiya H, Parvin N, Peralta C, Poon CL, Prabhakaran R, Saitou M, Sammi A, Sanio P, Sapoval N, Syed N, Treangen T, Wang G, Xu T, Yang J, Zhang S, Zhou W, Sedlazeck FJ, Busby B. Walker K, et al. Among authors: majidian s. F1000Res. 2022 May 16;11:530. doi: 10.12688/f1000research.110194.1. eCollection 2022. F1000Res. 2022. PMID: 36262335 Free PMC article.
[No title available]
[No authors listed] [No authors listed] PMID: 35303069
OMAMO: orthology-based alternative model organism selection.
Nicheperovich A, Altenhoff AM, Dessimoz C, Majidian S. Nicheperovich A, et al. Among authors: majidian s. Bioinformatics. 2022 May 13;38(10):2965-2966. doi: 10.1093/bioinformatics/btac163. Epub 2022 Mar 18. Bioinformatics. 2022. PMID: 35561194 Free PMC article.
Orthology inference at scale with FastOMA.
Majidian S, Nevers Y, Yazdizadeh Kharrazi A, Warwick Vesztrocy A, Pascarelli S, Moi D, Glover N, Altenhoff AM, Dessimoz C. Majidian S, et al. Nat Methods. 2025 Jan 3. doi: 10.1038/s41592-024-02552-8. Online ahead of print. Nat Methods. 2025. PMID: 39753922
New developments for the Quest for Orthologs benchmark service.
Altenhoff A, Nevers Y, Tran V, Jyothi D, Martin M, Cosentino S, Majidian S, Marcet-Houben M, Fuentes-Palacios D, Persson E, Walsh T, Lecompte O, Gabaldón T, Kelly S, Hu Y, Iwasaki W, Capella-Gutierrez S, Dessimoz C, Thomas PD, Ebersberger I, Sonnhammer E. Altenhoff A, et al. Among authors: majidian s. NAR Genom Bioinform. 2024 Dec 11;6(4):lqae167. doi: 10.1093/nargab/lqae167. eCollection 2024 Dec. NAR Genom Bioinform. 2024. PMID: 39664814 Free PMC article.
The GIAB genomic stratifications resource for human reference genomes.
Dwarshuis N, Kalra D, McDaniel J, Sanio P, Alvarez Jerez P, Jadhav B, Huang WE, Mondal R, Busby B, Olson ND, Sedlazeck FJ, Wagner J, Majidian S, Zook JM. Dwarshuis N, et al. Among authors: majidian s. Nat Commun. 2024 Oct 19;15(1):9029. doi: 10.1038/s41467-024-53260-y. Nat Commun. 2024. PMID: 39424793 Free PMC article.
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