Yang Y - Search Results

1

Accurately identifying nucleic-acid-binding sites through geometric graph learning on language model predicted structures.

Song Y, Yuan Q, Zhao H, Yang Y. Song Y, et al. Among authors: yang y. Brief Bioinform. 2023 Sep 22;24(6):bbad360. doi: 10.1093/bib/bbad360. Brief Bioinform. 2023. PMID: 37824738

2

Structure-based prediction of DNA-binding proteins by structural alignment and a volume-fraction corrected DFIRE-based energy function.

Zhao H, Yang Y, Zhou Y. Zhao H, et al. Among authors: yang y. Bioinformatics. 2010 Aug 1;26(15):1857-63. doi: 10.1093/bioinformatics/btq295. Epub 2010 Jun 4. Bioinformatics. 2010. PMID: 20525822 Free PMC article.

3

Structure-based prediction of RNA-binding domains and RNA-binding sites and application to structural genomics targets.

Zhao H, Yang Y, Zhou Y. Zhao H, et al. Among authors: yang y. Nucleic Acids Res. 2011 Apr;39(8):3017-25. doi: 10.1093/nar/gkq1266. Epub 2010 Dec 22. Nucleic Acids Res. 2011. PMID: 21183467 Free PMC article.

4

Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templates.

Yang Y, Faraggi E, Zhao H, Zhou Y. Yang Y, et al. Bioinformatics. 2011 Aug 1;27(15):2076-82. doi: 10.1093/bioinformatics/btr350. Epub 2011 Jun 11. Bioinformatics. 2011. PMID: 21666270 Free PMC article.

5

Highly accurate and high-resolution function prediction of RNA binding proteins by fold recognition and binding affinity prediction.

Zhao H, Yang Y, Zhou Y. Zhao H, et al. Among authors: yang y. RNA Biol. 2011 Nov-Dec;8(6):988-96. doi: 10.4161/rna.8.6.17813. Epub 2011 Nov 1. RNA Biol. 2011. PMID: 21955494 Free PMC article.

6

A new size-independent score for pairwise protein structure alignment and its application to structure classification and nucleic-acid binding prediction.

Yang Y, Zhan J, Zhao H, Zhou Y. Yang Y, et al. Proteins. 2012 Aug;80(8):2080-8. doi: 10.1002/prot.24100. Epub 2012 May 25. Proteins. 2012. PMID: 22522696 Free PMC article.

7

Prediction of RNA binding proteins comes of age from low resolution to high resolution.

Zhao H, Yang Y, Zhou Y. Zhao H, et al. Among authors: yang y. Mol Biosyst. 2013 Oct;9(10):2417-25. doi: 10.1039/c3mb70167k. Mol Biosyst. 2013. PMID: 23872922 Free PMC article. Review.

8

Prediction and validation of the unexplored RNA-binding protein atlas of the human proteome.

Zhao H, Yang Y, Janga SC, Kao CC, Zhou Y. Zhao H, et al. Among authors: yang y. Proteins. 2014 Apr;82(4):640-7. doi: 10.1002/prot.24441. Epub 2013 Nov 22. Proteins. 2014. PMID: 24123256 Free PMC article.

9

The role of semidisorder in temperature adaptation of bacterial FlgM proteins.

Wang J, Yang Y, Cao Z, Li Z, Zhao H, Zhou Y. Wang J, et al. Among authors: yang y. Biophys J. 2013 Dec 3;105(11):2598-605. doi: 10.1016/j.bpj.2013.10.026. Biophys J. 2013. PMID: 24314090 Free PMC article.

10

SPOT-Seq-RNA: predicting protein-RNA complex structure and RNA-binding function by fold recognition and binding affinity prediction.

Yang Y, Zhao H, Wang J, Zhou Y. Yang Y, et al. Methods Mol Biol. 2014;1137:119-30. doi: 10.1007/978-1-4939-0366-5_9. Methods Mol Biol. 2014. PMID: 24573478 Free PMC article.

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