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Systematic investigation of allelic regulatory activity of schizophrenia-associated common variants.
McAfee JC, Lee S, Lee J, Bell JL, Krupa O, Davis J, Insigne K, Bond ML, Zhao N, Boyle AP, Phanstiel DH, Love MI, Stein JL, Ruzicka WB, Davila-Velderrain J, Kosuri S, Won H. McAfee JC, et al. Among authors: phanstiel dh. Cell Genom. 2023 Sep 15;3(10):100404. doi: 10.1016/j.xgen.2023.100404. eCollection 2023 Oct 11. Cell Genom. 2023. PMID: 37868037 Free PMC article.
A mouse to human search for plasma proteome changes associated with pancreatic tumor development.
Faca VM, Song KS, Wang H, Zhang Q, Krasnoselsky AL, Newcomb LF, Plentz RR, Gurumurthy S, Redston MS, Pitteri SJ, Pereira-Faca SR, Ireton RC, Katayama H, Glukhova V, Phanstiel D, Brenner DE, Anderson MA, Misek D, Scholler N, Urban ND, Barnett MJ, Edelstein C, Goodman GE, Thornquist MD, McIntosh MW, DePinho RA, Bardeesy N, Hanash SM. Faca VM, et al. PLoS Med. 2008 Jun 10;5(6):e123. doi: 10.1371/journal.pmed.0050123. PLoS Med. 2008. PMID: 18547137 Free PMC article.
Whole-exome sequencing identifies tetratricopeptide repeat domain 7A (TTC7A) mutations for combined immunodeficiency with intestinal atresias.
Chen R, Giliani S, Lanzi G, Mias GI, Lonardi S, Dobbs K, Manis J, Im H, Gallagher JE, Phanstiel DH, Euskirchen G, Lacroute P, Bettinger K, Moratto D, Weinacht K, Montin D, Gallo E, Mangili G, Porta F, Notarangelo LD, Pedretti S, Al-Herz W, Alfahdli W, Comeau AM, Traister RS, Pai SY, Carella G, Facchetti F, Nadeau KC, Snyder M, Notarangelo LD. Chen R, et al. Among authors: phanstiel dh. J Allergy Clin Immunol. 2013 Sep;132(3):656-664.e17. doi: 10.1016/j.jaci.2013.06.013. Epub 2013 Jul 4. J Allergy Clin Immunol. 2013. PMID: 23830146 Free PMC article.
Mango: a bias-correcting ChIA-PET analysis pipeline.
Phanstiel DH, Boyle AP, Heidari N, Snyder MP. Phanstiel DH, et al. Bioinformatics. 2015 Oct 1;31(19):3092-8. doi: 10.1093/bioinformatics/btv336. Epub 2015 Jun 1. Bioinformatics. 2015. PMID: 26034063 Free PMC article.
CoralP: Flexible visualization of the human phosphatome.
Min A, Deoudes E, Bond ML, Davis ES, Phanstiel DH. Min A, et al. Among authors: phanstiel dh. J Open Source Softw. 2019;4(44):1837. doi: 10.21105/joss.01837. Epub 2019 Dec 3. J Open Source Softw. 2019. PMID: 31903446 Free PMC article.
Plotgardener: cultivating precise multi-panel figures in R.
Kramer NE, Davis ES, Wenger CD, Deoudes EM, Parker SM, Love MI, Phanstiel DH. Kramer NE, et al. Among authors: phanstiel dh. Bioinformatics. 2022 Mar 28;38(7):2042-2045. doi: 10.1093/bioinformatics/btac057. Bioinformatics. 2022. PMID: 35134826 Free PMC article.
49 results