Stockham N - Search Results

1

Identifying crossovers and shared genetic material in whole genome sequencing data from families.

Paskov K, Chrisman B, Stockham N, Washington PY, Dunlap K, Jung JY, Wall DP. Paskov K, et al. Among authors: stockham n. Genome Res. 2023 Oct;33(10):1747-1756. doi: 10.1101/gr.277172.122. Epub 2023 Oct 25. Genome Res. 2023. PMID: 37879861 Free PMC article.

2

Estimating sequencing error rates using families.

Paskov K, Jung JY, Chrisman B, Stockham NT, Washington P, Varma M, Sun MW, Wall DP. Paskov K, et al. BioData Min. 2021 Apr 23;14(1):27. doi: 10.1186/s13040-021-00259-6. BioData Min. 2021. PMID: 33892748 Free PMC article.

3

Localizing unmapped sequences with families to validate the Telomere-to-Telomere assembly and identify new hotspots for genetic diversity.

Chrisman B, He C, Jung JY, Stockham N, Paskov K, Washington P, Petereit J, Wall DP. Chrisman B, et al. Among authors: stockham n. Genome Res. 2023 Oct;33(10):1734-1746. doi: 10.1101/gr.277175.122. Epub 2023 Oct 25. Genome Res. 2023. PMID: 37879860 Free PMC article.

4

Coalitional Game Theory Facilitates Identification of Non-Coding Variants Associated With Autism.

Sun MW, Gupta A, Varma M, Paskov KM, Jung JY, Stockham NT, Wall DP. Sun MW, et al. Biomed Inform Insights. 2019 Mar 8;11:1178222619832859. doi: 10.1177/1178222619832859. eCollection 2019. Biomed Inform Insights. 2019. PMID: 30886520 Free PMC article.

5

Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.

Ruzzo EK, Pérez-Cano L, Jung JY, Wang LK, Kashef-Haghighi D, Hartl C, Singh C, Xu J, Hoekstra JN, Leventhal O, Leppä VM, Gandal MJ, Paskov K, Stockham N, Polioudakis D, Lowe JK, Prober DA, Geschwind DH, Wall DP. Ruzzo EK, et al. Among authors: stockham n. Cell. 2019 Aug 8;178(4):850-866.e26. doi: 10.1016/j.cell.2019.07.015. Cell. 2019. PMID: 31398340 Free PMC article.

6

Game theoretic centrality: a novel approach to prioritize disease candidate genes by combining biological networks with the Shapley value.

Sun MW, Moretti S, Paskov KM, Stockham NT, Varma M, Chrisman BS, Washington PY, Jung JY, Wall DP. Sun MW, et al. BMC Bioinformatics. 2020 Aug 12;21(1):356. doi: 10.1186/s12859-020-03693-1. BMC Bioinformatics. 2020. PMID: 32787845 Free PMC article.

7

A maximum flow-based network approach for identification of stable noncoding biomarkers associated with the multigenic neurological condition, autism.

Varma M, Paskov KM, Chrisman BS, Sun MW, Jung JY, Stockham NT, Washington PY, Wall DP. Varma M, et al. BioData Min. 2021 May 3;14(1):28. doi: 10.1186/s13040-021-00262-x. BioData Min. 2021. PMID: 33941233 Free PMC article.

8

A Method for Localizing Non-Reference Sequences to the Human Genome.

Chrisman BS, Paskov KM, He C, Jung JY, Stockham N, Washington PY, Wall DP. Chrisman BS, et al. Among authors: stockham n. Pac Symp Biocomput. 2022;27:313-324. Pac Symp Biocomput. 2022. PMID: 34890159 Free PMC article.

9

Identification of Social Engagement Indicators Associated With Autism Spectrum Disorder Using a Game-Based Mobile App: Comparative Study of Gaze Fixation and Visual Scanning Methods.

Varma M, Washington P, Chrisman B, Kline A, Leblanc E, Paskov K, Stockham N, Jung JY, Sun MW, Wall DP. Varma M, et al. Among authors: stockham n. J Med Internet Res. 2022 Feb 15;24(2):e31830. doi: 10.2196/31830. J Med Internet Res. 2022. PMID: 35166683 Free PMC article.

10

The human "contaminome": bacterial, viral, and computational contamination in whole genome sequences from 1000 families.

Chrisman B, He C, Jung JY, Stockham N, Paskov K, Washington P, Wall DP. Chrisman B, et al. Among authors: stockham n. Sci Rep. 2022 Jun 14;12(1):9863. doi: 10.1038/s41598-022-13269-z. Sci Rep. 2022. PMID: 35701436 Free PMC article.

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