Shang J - Search Results

1

Identifying ARG-carrying bacteriophages in a lake replenished by reclaimed water using deep learning techniques.

Wang D, Shang J, Lin H, Liang J, Wang C, Sun Y, Bai Y, Qu J. Wang D, et al. Among authors: shang j. Water Res. 2024 Jan 1;248:120859. doi: 10.1016/j.watres.2023.120859. Epub 2023 Nov 11. Water Res. 2024. PMID: 37976954

2

PbZr0.4Ti0.6O3 and Ba0.9Sr0.1TiO3 reflectors derived from chemical solutions containing polymers.

Hu GJ, Shang JL, Sun Y, Zhang T, Wu J, Xie J. Hu GJ, et al. Among authors: shang jl. Opt Lett. 2008 Sep 15;33(18):2062-4. doi: 10.1364/ol.33.002062. Opt Lett. 2008. PMID: 18794931

3

A binning tool to reconstruct viral haplotypes from assembled contigs.

Chen J, Shang J, Wang J, Sun Y. Chen J, et al. Among authors: shang j. BMC Bioinformatics. 2019 Nov 4;20(1):544. doi: 10.1186/s12859-019-3138-1. BMC Bioinformatics. 2019. PMID: 31684876 Free PMC article.

4

CHEER: HierarCHical taxonomic classification for viral mEtagEnomic data via deep leaRning.

Shang J, Sun Y. Shang J, et al. Methods. 2021 May;189:95-103. doi: 10.1016/j.ymeth.2020.05.018. Epub 2020 May 23. Methods. 2021. PMID: 32454212 Free PMC article.

5

Improving protein domain classification for third-generation sequencing reads using deep learning.

Du N, Shang J, Sun Y. Du N, et al. Among authors: shang j. BMC Genomics. 2021 Apr 9;22(1):251. doi: 10.1186/s12864-021-07468-7. BMC Genomics. 2021. PMID: 33836667 Free PMC article.

6

Bacteriophage classification for assembled contigs using graph convolutional network.

Shang J, Jiang J, Sun Y. Shang J, et al. Bioinformatics. 2021 Jul 12;37(Suppl_1):i25-i33. doi: 10.1093/bioinformatics/btab293. Bioinformatics. 2021. PMID: 34252923 Free PMC article.

7

Predicting the hosts of prokaryotic viruses using GCN-based semi-supervised learning.

Shang J, Sun Y. Shang J, et al. BMC Biol. 2021 Nov 24;19(1):250. doi: 10.1186/s12915-021-01180-4. BMC Biol. 2021. PMID: 34819064 Free PMC article.

8

RdRp-based sensitive taxonomic classification of RNA viruses for metagenomic data.

Tang X, Shang J, Sun Y. Tang X, et al. Among authors: shang j. Brief Bioinform. 2022 Mar 10;23(2):bbac011. doi: 10.1093/bib/bbac011. Brief Bioinform. 2022. PMID: 35136930 Free PMC article.

9

CHERRY: a Computational metHod for accuratE pRediction of virus-pRokarYotic interactions using a graph encoder-decoder model.

Shang J, Sun Y. Shang J, et al. Brief Bioinform. 2022 Sep 20;23(5):bbac182. doi: 10.1093/bib/bbac182. Brief Bioinform. 2022. PMID: 35595715 Free PMC article.

10

Accurate identification of bacteriophages from metagenomic data using Transformer.

Shang J, Tang X, Guo R, Sun Y. Shang J, et al. Brief Bioinform. 2022 Jul 18;23(4):bbac258. doi: 10.1093/bib/bbac258. Brief Bioinform. 2022. PMID: 35769000 Free PMC article.

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