Sun Y - Search Results

1

Identifying ARG-carrying bacteriophages in a lake replenished by reclaimed water using deep learning techniques.

Wang D, Shang J, Lin H, Liang J, Wang C, Sun Y, Bai Y, Qu J. Wang D, et al. Among authors: sun y. Water Res. 2024 Jan 1;248:120859. doi: 10.1016/j.watres.2023.120859. Epub 2023 Nov 11. Water Res. 2024. PMID: 37976954

2

HaploDMF: viral haplotype reconstruction from long reads via deep matrix factorization.

Cai D, Shang J, Sun Y. Cai D, et al. Among authors: sun y. Bioinformatics. 2022 Dec 13;38(24):5360-5367. doi: 10.1093/bioinformatics/btac708. Bioinformatics. 2022. PMID: 36308467 Free PMC article.

3

Phage family classification under Caudoviricetes: A review of current tools using the latest ICTV classification framework.

Zhu Y, Shang J, Peng C, Sun Y. Zhu Y, et al. Among authors: sun y. Front Microbiol. 2022 Dec 16;13:1032186. doi: 10.3389/fmicb.2022.1032186. eCollection 2022. Front Microbiol. 2022. PMID: 36590402 Free PMC article. Review.

4

PhaTYP: predicting the lifestyle for bacteriophages using BERT.

Shang J, Tang X, Sun Y. Shang J, et al. Among authors: sun y. Brief Bioinform. 2023 Jan 19;24(1):bbac487. doi: 10.1093/bib/bbac487. Brief Bioinform. 2023. PMID: 36659812 Free PMC article.

5

LncRNA-Top: Controlled deep learning approaches for lncRNA gene regulatory relationship annotations across different platforms.

Xie W, Chen X, Zheng Z, Wang F, Zhu X, Lin Q, Sun Y, Wong KC. Xie W, et al. Among authors: sun y. iScience. 2023 Oct 12;26(11):108197. doi: 10.1016/j.isci.2023.108197. eCollection 2023 Nov 17. iScience. 2023. PMID: 37965148 Free PMC article.

6

HMMPolish: a coding region polishing tool for TGS-sequenced RNA viruses.

Yu R, Abdullah SMU, Sun Y. Yu R, et al. Among authors: sun y. Brief Bioinform. 2023 Sep 20;24(5):bbad264. doi: 10.1093/bib/bbad264. Brief Bioinform. 2023. PMID: 37478372 Free PMC article.

7

VirTAXA: enhancing RNA virus taxonomic classification with remote homology search and tree-based validation.

Zhu Y, Chen G, Sun Y. Zhu Y, et al. Among authors: sun y. Bioinformatics. 2024 Oct 1;40(10):btae575. doi: 10.1093/bioinformatics/btae575. Bioinformatics. 2024. PMID: 39325874 Free PMC article.

8

High-resolution strain-level microbiome composition analysis from short reads.

Liao H, Ji Y, Sun Y. Liao H, et al. Among authors: sun y. Microbiome. 2023 Aug 17;11(1):183. doi: 10.1186/s40168-023-01615-w. Microbiome. 2023. PMID: 37587527 Free PMC article.

9

VirBot: an RNA viral contig detector for metagenomic data.

Chen G, Tang X, Shi M, Sun Y. Chen G, et al. Among authors: sun y. Bioinformatics. 2023 Mar 1;39(3):btad093. doi: 10.1093/bioinformatics/btad093. Bioinformatics. 2023. PMID: 36794927 Free PMC article.

10

Accelerating de novo SINE annotation in plant and animal genomes.

Liao H, Sun Y, Ou S. Liao H, et al. Among authors: sun y. Mob DNA. 2024 Oct 19;15(1):24. doi: 10.1186/s13100-024-00331-y. Mob DNA. 2024. PMID: 39427206 Free PMC article.

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