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The metabolic, virulence and antimicrobial resistance profiles of colonising Streptococcus pneumoniae shift after PCV13 introduction in urban Malawi.
Obolski U, Swarthout TD, Kalizang'oma A, Mwalukomo TS, Chan JM, Weight CM, Brown C, Cave R, Cornick J, Kamng'ona AW, Msefula J, Ercoli G, Brown JS, Lourenço J, Maiden MC, French N, Gupta S, Heyderman RS. Obolski U, et al. Among authors: gupta s. Nat Commun. 2023 Nov 17;14(1):7477. doi: 10.1038/s41467-023-43160-y. Nat Commun. 2023. PMID: 37978177 Free PMC article.
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Gupta S, Maiden M. Gupta S, et al. Parasitol Today. 2000 Jun;16(6):266. doi: 10.1016/s0169-4758(00)01683-5. Parasitol Today. 2000. PMID: 10827440 No abstract available.
MANTIS: an R package that simulates multilocus models of pathogen evolution.
Lourenço J, Wikramaratna PS, Gupta S. Lourenço J, et al. Among authors: gupta s. BMC Bioinformatics. 2015 May 28;16:176. doi: 10.1186/s12859-015-0598-9. BMC Bioinformatics. 2015. PMID: 26017358 Free PMC article.
MANTIS can simulate and analyse epidemiological time-series generated under the biological assumptions of the strain theory of host-pathogen systems by Gupta et al. CONCLUSIONS: MANTIS wraps a C/C++ ordinary-differential equations system and Runge-Kutta solver into a set o …
MANTIS can simulate and analyse epidemiological time-series generated under the biological assumptions of the strain theory of host-pathogen …
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