Shim H - Search Results

1

A paradoxical population structure of var DBLα types in Africa.

Tan MH, Tiedje KE, Feng Q, Zhan Q, Pascual M, Shim H, Chan YB, Day KP. Tan MH, et al. Among authors: shim h. bioRxiv [Preprint]. 2023 Nov 7:2023.11.05.565723. doi: 10.1101/2023.11.05.565723. bioRxiv. 2023. PMID: 37986738 Free PMC article. Preprint.

2

An accurate method for identifying recent recombinants from unaligned sequences.

Feng Q, Tiedje KE, Ruybal-Pesántez S, Tonkin-Hill G, Duffy MF, Day KP, Shim H, Chan YB. Feng Q, et al. Among authors: shim h. Bioinformatics. 2022 Mar 28;38(7):1823-1829. doi: 10.1093/bioinformatics/btac012. Bioinformatics. 2022. PMID: 35025988 Free PMC article.

3

Unravelling var complexity: Relationship between DBLα types and var genes in Plasmodium falciparum.

Tan MH, Shim H, Chan YB, Day KP. Tan MH, et al. Among authors: shim h. Front Parasitol. 2022;1:1006341. doi: 10.3389/fpara.2022.1006341. Epub 2023 Jan 9. Front Parasitol. 2022. PMID: 36998722 Free PMC article.

4

Going beyond cell clustering and feature aggregation: Is there single cell level information in single-cell ATAC-seq data?

Kwok AWC, Shim H, McCarthy DJ. Kwok AWC, et al. Among authors: shim h. bioRxiv [Preprint]. 2024 Dec 9:2024.12.04.626927. doi: 10.1101/2024.12.04.626927. bioRxiv. 2024. PMID: 39713401 Free PMC article. Preprint.

5

Identification of cell barcodes from long-read single-cell RNA-seq with BLAZE.

You Y, Prawer YDJ, De Paoli-Iseppi R, Hunt CPJ, Parish CL, Shim H, Clark MB. You Y, et al. Among authors: shim h. Genome Biol. 2023 Apr 6;24(1):66. doi: 10.1186/s13059-023-02907-y. Genome Biol. 2023. PMID: 37024980 Free PMC article.

6

McSplicer: a probabilistic model for estimating splice site usage from RNA-seq data.

Alqassem I, Sonthalia Y, Klitzke-Feser E, Shim H, Canzar S. Alqassem I, et al. Among authors: shim h. Bioinformatics. 2021 Aug 4;37(14):2004–2011. doi: 10.1093/bioinformatics/btab050. Epub 2021 Jan 30. Bioinformatics. 2021. PMID: 33515239 Free PMC article.

7

sccomp: Robust differential composition and variability analysis for single-cell data.

Mangiola S, Roth-Schulze AJ, Trussart M, Zozaya-Valdés E, Ma M, Gao Z, Rubin AF, Speed TP, Shim H, Papenfuss AT. Mangiola S, et al. Among authors: shim h. Proc Natl Acad Sci U S A. 2023 Aug 15;120(33):e2203828120. doi: 10.1073/pnas.2203828120. Epub 2023 Aug 7. Proc Natl Acad Sci U S A. 2023. PMID: 37549298 Free PMC article.

8

Trade-off between conservation of biological variation and batch effect removal in deep generative modeling for single-cell transcriptomics.

Li H, McCarthy DJ, Shim H, Wei S. Li H, et al. Among authors: shim h. BMC Bioinformatics. 2022 Nov 3;23(1):460. doi: 10.1186/s12859-022-05003-3. BMC Bioinformatics. 2022. PMID: 36329399 Free PMC article.

9

NanoSplicer: accurate identification of splice junctions using Oxford Nanopore sequencing.

You Y, Clark MB, Shim H. You Y, et al. Among authors: shim h. Bioinformatics. 2022 Aug 2;38(15):3741-3748. doi: 10.1093/bioinformatics/btac359. Bioinformatics. 2022. PMID: 35639973 Free PMC article.

10

sgcocaller and comapr: personalised haplotype assembly and comparative crossover map analysis using single-gamete sequencing data.

Lyu R, Tsui V, Crismani W, Liu R, Shim H, McCarthy DJ. Lyu R, et al. Among authors: shim h. Nucleic Acids Res. 2022 Nov 11;50(20):e118. doi: 10.1093/nar/gkac764. Nucleic Acids Res. 2022. PMID: 36107768 Free PMC article.

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