Marti-Renom MA - Search Results

1

Enhancer-driven 3D chromatin domain folding modulates transcription in human mammary tumor cells.

Kocanova S, Raynal F, Goiffon I, Oksuz BA, Baú D, Kamgoué A, Cantaloube S, Zhan Y, Lajoie B, Marti-Renom MA, Dekker J, Bystricky K. Kocanova S, et al. Among authors: marti renom ma. Life Sci Alliance. 2023 Nov 21;7(2):e202302154. doi: 10.26508/lsa.202302154. Print 2024 Feb. Life Sci Alliance. 2023. PMID: 37989525 Free PMC article.

2

The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules.

Baù D, Sanyal A, Lajoie BR, Capriotti E, Byron M, Lawrence JB, Dekker J, Marti-Renom MA. Baù D, et al. Nat Struct Mol Biol. 2011 Jan;18(1):107-14. doi: 10.1038/nsmb.1936. Epub 2010 Dec 5. Nat Struct Mol Biol. 2011. PMID: 21131981 Free PMC article.

3

Chromatin globules: a common motif of higher order chromosome structure?

Sanyal A, Baù D, Martí-Renom MA, Dekker J. Sanyal A, et al. Curr Opin Cell Biol. 2011 Jun;23(3):325-31. doi: 10.1016/j.ceb.2011.03.009. Epub 2011 Apr 12. Curr Opin Cell Biol. 2011. PMID: 21489772 Free PMC article. Review.

4

Genome structure determination via 3C-based data integration by the Integrative Modeling Platform.

Baù D, Marti-Renom MA. Baù D, et al. Methods. 2012 Nov;58(3):300-6. doi: 10.1016/j.ymeth.2012.04.004. Epub 2012 Apr 13. Methods. 2012. PMID: 22522224 Review.

5

Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data.

Dekker J, Marti-Renom MA, Mirny LA. Dekker J, et al. Nat Rev Genet. 2013 Jun;14(6):390-403. doi: 10.1038/nrg3454. Epub 2013 May 9. Nat Rev Genet. 2013. PMID: 23657480 Free PMC article. Review.

6

The Conformation of Yeast Chromosome III Is Mating Type Dependent and Controlled by the Recombination Enhancer.

Belton JM, Lajoie BR, Audibert S, Cantaloube S, Lassadi I, Goiffon I, Baù D, Marti-Renom MA, Bystricky K, Dekker J. Belton JM, et al. Cell Rep. 2015 Dec 1;13(9):1855-67. doi: 10.1016/j.celrep.2015.10.063. Epub 2015 Nov 19. Cell Rep. 2015. PMID: 26655901 Free PMC article.

7

Structure determination of genomic domains by satisfaction of spatial restraints.

Baù D, Marti-Renom MA. Baù D, et al. Chromosome Res. 2011 Jan;19(1):25-35. doi: 10.1007/s10577-010-9167-2. Chromosome Res. 2011. PMID: 21190133 Review.

8

Automatic analysis and 3D-modelling of Hi-C data using TADbit reveals structural features of the fly chromatin colors.

Serra F, Baù D, Goodstadt M, Castillo D, Filion GJ, Marti-Renom MA. Serra F, et al. PLoS Comput Biol. 2017 Jul 19;13(7):e1005665. doi: 10.1371/journal.pcbi.1005665. eCollection 2017 Jul. PLoS Comput Biol. 2017. PMID: 28723903 Free PMC article.

9

Assessing the limits of restraint-based 3D modeling of genomes and genomic domains.

Trussart M, Serra F, Baù D, Junier I, Serrano L, Marti-Renom MA. Trussart M, et al. Nucleic Acids Res. 2015 Apr 20;43(7):3465-77. doi: 10.1093/nar/gkv221. Epub 2015 Mar 23. Nucleic Acids Res. 2015. PMID: 25800747 Free PMC article.

10

Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation.

Le Dily F, Baù D, Pohl A, Vicent GP, Serra F, Soronellas D, Castellano G, Wright RH, Ballare C, Filion G, Marti-Renom MA, Beato M. Le Dily F, et al. Genes Dev. 2014 Oct 1;28(19):2151-62. doi: 10.1101/gad.241422.114. Genes Dev. 2014. PMID: 25274727 Free PMC article.

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