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Page 1
Discovery of antibiotics that selectively kill metabolically dormant bacteria.
Zheng EJ, Valeri JA, Andrews IW, Krishnan A, Bandyopadhyay P, Anahtar MN, Herneisen A, Schulte F, Linnehan B, Wong F, Stokes JM, Renner LD, Lourido S, Collins JJ. Zheng EJ, et al. Among authors: valeri ja. Cell Chem Biol. 2024 Apr 18;31(4):712-728.e9. doi: 10.1016/j.chembiol.2023.10.026. Epub 2023 Nov 28. Cell Chem Biol. 2024. PMID: 38029756
LADL: light-activated dynamic looping for endogenous gene expression control.
Kim JH, Rege M, Valeri J, Dunagin MC, Metzger A, Titus KR, Gilgenast TG, Gong W, Beagan JA, Raj A, Phillips-Cremins JE. Kim JH, et al. Among authors: valeri j. Nat Methods. 2019 Jul;16(7):633-639. doi: 10.1038/s41592-019-0436-5. Epub 2019 Jun 24. Nat Methods. 2019. PMID: 31235883 Free PMC article.
Gaming bacterial metabolism.
Valeri JA, Krishnan A, Collins JJ. Valeri JA, et al. Nat Microbiol. 2023 Jun;8(6):1004-1005. doi: 10.1038/s41564-023-01390-2. Nat Microbiol. 2023. PMID: 37268773 No abstract available.
Discovery of a structural class of antibiotics with explainable deep learning.
Wong F, Zheng EJ, Valeri JA, Donghia NM, Anahtar MN, Omori S, Li A, Cubillos-Ruiz A, Krishnan A, Jin W, Manson AL, Friedrichs J, Helbig R, Hajian B, Fiejtek DK, Wagner FF, Soutter HH, Earl AM, Stokes JM, Renner LD, Collins JJ. Wong F, et al. Among authors: valeri ja. Nature. 2024 Feb;626(7997):177-185. doi: 10.1038/s41586-023-06887-8. Epub 2023 Dec 20. Nature. 2024. PMID: 38123686 Free PMC article.