Hirota S - Search Results

1

Structural and thermodynamic insights into antibody light chain tetramer formation through 3D domain swapping.

Sakai T, Mashima T, Kobayashi N, Ogata H, Duan L, Fujiki R, Hengphasatporn K, Uda T, Shigeta Y, Hifumi E, Hirota S. Sakai T, et al. Among authors: hirota s. Nat Commun. 2023 Dec 8;14(1):7807. doi: 10.1038/s41467-023-43443-4. Nat Commun. 2023. PMID: 38065949 Free PMC article.

2

Activation process of [NiFe] hydrogenase elucidated by high-resolution X-ray analyses: conversion of the ready to the unready state.

Ogata H, Hirota S, Nakahara A, Komori H, Shibata N, Kato T, Kano K, Higuchi Y. Ogata H, et al. Among authors: hirota s. Structure. 2005 Nov;13(11):1635-42. doi: 10.1016/j.str.2005.07.018. Structure. 2005. PMID: 16271886 Free article.

3

Use of 3D domain swapping in constructing supramolecular metalloproteins.

Hirota S, Mashima T, Kobayashi N. Hirota S, et al. Chem Commun (Camb). 2021 Nov 16;57(91):12074-12086. doi: 10.1039/d1cc04608j. Chem Commun (Camb). 2021. PMID: 34714300 Review.

4

Construction of ferritin hydrogels utilizing subunit-subunit interactions.

Yamanaka M, Mashima T, Ogihara M, Okamoto M, Uchihashi T, Hirota S. Yamanaka M, et al. Among authors: hirota s. PLoS One. 2021 Nov 3;16(11):e0259052. doi: 10.1371/journal.pone.0259052. eCollection 2021. PLoS One. 2021. PMID: 34731167 Free PMC article.

5

Structural and spectroscopic characterization of CO inhibition of [NiFe]-hydrogenase from Citrobacter sp. S-77.

Imanishi T, Nishikawa K, Taketa M, Higuchi K, Tai H, Hirota S, Hojo H, Kawakami T, Hataguchi K, Matsumoto K, Ogata H, Higuchi Y. Imanishi T, et al. Among authors: hirota s. Acta Crystallogr F Struct Biol Commun. 2022 Feb 1;78(Pt 2):66-74. doi: 10.1107/S2053230X22000188. Epub 2022 Jan 27. Acta Crystallogr F Struct Biol Commun. 2022. PMID: 35102895 Free PMC article.

6

Experimental and theoretical study on converting myoglobin into a stable domain-swapped dimer by utilizing a tight hydrogen bond network at the hinge region.

Xie C, Shimoyama H, Yamanaka M, Nagao S, Komori H, Shibata N, Higuchi Y, Shigeta Y, Hirota S. Xie C, et al. Among authors: hirota s. RSC Adv. 2021 Nov 23;11(59):37604-37611. doi: 10.1039/d1ra06888a. eCollection 2021 Nov 17. RSC Adv. 2021. PMID: 35496441 Free PMC article.

7

Heme-bound tyrosine vibrations in hemoglobin M: Resonance Raman, crystallography, and DFT calculation.

Nagatomo S, Shoji M, Terada T, Nakatani K, Shigeta Y, Hirota S, Yanagisawa S, Kubo M, Kitagawa T, Nagai M, Ohki M, Park SY, Shibayama N. Nagatomo S, et al. Among authors: hirota s. Biophys J. 2022 Jul 19;121(14):2767-2780. doi: 10.1016/j.bpj.2022.06.012. Epub 2022 Jun 9. Biophys J. 2022. PMID: 35689380 Free PMC article.

8

Structural region essential for amyloid fibril formation in cytochrome c elucidated by optical trapping.

Hirota S, Chiu CL, Chang CJ, Lo PH, Chen T, Yang H, Yamanaka M, Mashima T, Xie C, Masuhara H, Sugiyama T. Hirota S, et al. Chem Commun (Camb). 2022 Nov 17;58(92):12839-12842. doi: 10.1039/d2cc04647d. Chem Commun (Camb). 2022. PMID: 36315406

9

Construction of ligand-binding controlled hemoprotein assemblies utilizing 3D domain swapping.

Mashima T, Yamanaka M, Yoshida A, Kobayashi N, Kanaoka Y, Uchihashi T, Hirota S. Mashima T, et al. Among authors: hirota s. Chem Commun (Camb). 2024 Aug 27;60(70):9440-9443. doi: 10.1039/d4cc03129f. Chem Commun (Camb). 2024. PMID: 39139060

10

Why is Dimeric 3D Domain Swapping in Antibody Light Chains Missing from the Solution? Atomistic Insights Mechanisms.

Duan L, Hengphasatporn K, Sakai T, Fujiki R, Yoshida N, Hirota S, Shigeta Y. Duan L, et al. Among authors: hirota s. J Phys Chem B. 2024 Sep 26;128(38):9086-9093. doi: 10.1021/acs.jpcb.4c03234. Epub 2024 Sep 13. J Phys Chem B. 2024. PMID: 39268801

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