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Single-cell DNA methylome and 3D multi-omic atlas of the adult mouse brain.
Liu H, Zeng Q, Zhou J, Bartlett A, Wang BA, Berube P, Tian W, Kenworthy M, Altshul J, Nery JR, Chen H, Castanon RG, Zu S, Li YE, Lucero J, Osteen JK, Pinto-Duarte A, Lee J, Rink J, Cho S, Emerson N, Nunn M, O'Connor C, Wu Z, Stoica I, Yao Z, Smith KA, Tasic B, Luo C, Dixon JR, Zeng H, Ren B, Behrens MM, Ecker JR. Liu H, et al. Among authors: zhou j. Nature. 2023 Dec;624(7991):366-377. doi: 10.1038/s41586-023-06805-y. Epub 2023 Dec 13. Nature. 2023. PMID: 38092913 Free PMC article.
Robust single-cell DNA methylome profiling with snmC-seq2.
Luo C, Rivkin A, Zhou J, Sandoval JP, Kurihara L, Lucero J, Castanon R, Nery JR, Pinto-Duarte A, Bui B, Fitzpatrick C, O'Connor C, Ruga S, Van Eden ME, Davis DA, Mash DC, Behrens MM, Ecker JR. Luo C, et al. Among authors: zhou j. Nat Commun. 2018 Sep 20;9(1):3824. doi: 10.1038/s41467-018-06355-2. Nat Commun. 2018. PMID: 30237449 Free PMC article.
DNA methylation atlas of the mouse brain at single-cell resolution.
Liu H, Zhou J, Tian W, Luo C, Bartlett A, Aldridge A, Lucero J, Osteen JK, Nery JR, Chen H, Rivkin A, Castanon RG, Clock B, Li YE, Hou X, Poirion OB, Preissl S, Pinto-Duarte A, O'Connor C, Boggeman L, Fitzpatrick C, Nunn M, Mukamel EA, Zhang Z, Callaway EM, Ren B, Dixon JR, Behrens MM, Ecker JR. Liu H, et al. Among authors: zhou j. Nature. 2021 Oct;598(7879):120-128. doi: 10.1038/s41586-020-03182-8. Epub 2021 Oct 6. Nature. 2021. PMID: 34616061 Free PMC article.
Epigenomic diversity of cortical projection neurons in the mouse brain.
Zhang Z, Zhou J, Tan P, Pang Y, Rivkin AC, Kirchgessner MA, Williams E, Lee CT, Liu H, Franklin AD, Miyazaki PA, Bartlett A, Aldridge AI, Vu M, Boggeman L, Fitzpatrick C, Nery JR, Castanon RG, Rashid M, Jacobs MW, Ito-Cole T, O'Connor C, Pinto-Duartec A, Dominguez B, Smith JB, Niu SY, Lee KF, Jin X, Mukamel EA, Behrens MM, Ecker JR, Callaway EM. Zhang Z, et al. Among authors: zhou j. Nature. 2021 Oct;598(7879):167-173. doi: 10.1038/s41586-021-03223-w. Epub 2021 Oct 6. Nature. 2021. PMID: 34616065 Free PMC article.
Single nucleus multi-omics identifies human cortical cell regulatory genome diversity.
Luo C, Liu H, Xie F, Armand EJ, Siletti K, Bakken TE, Fang R, Doyle WI, Stuart T, Hodge RD, Hu L, Wang BA, Zhang Z, Preissl S, Lee DS, Zhou J, Niu SY, Castanon R, Bartlett A, Rivkin A, Wang X, Lucero J, Nery JR, Davis DA, Mash DC, Satija R, Dixon JR, Linnarsson S, Lein E, Behrens MM, Ren B, Mukamel EA, Ecker JR. Luo C, et al. Among authors: zhou j. Cell Genom. 2022 Mar 9;2(3):100107. doi: 10.1016/j.xgen.2022.100107. Cell Genom. 2022. PMID: 35419551 Free PMC article.
Comparative single cell epigenomic analysis of gene regulatory programs in the rodent and primate neocortex.
Zemke NR, Armand EJ, Wang W, Lee S, Zhou J, Li YE, Liu H, Tian W, Nery JR, Castanon RG, Bartlett A, Osteen JK, Li D, Zhuo X, Xu V, Miller M, Krienen FM, Zhang Q, Taskin N, Ting J, Feng G, McCarroll SA, Callaway EM, Wang T, Behrens MM, Lein ES, Ecker JR, Ren B. Zemke NR, et al. Among authors: zhou j. bioRxiv [Preprint]. 2023 Apr 8:2023.04.08.536119. doi: 10.1101/2023.04.08.536119. bioRxiv. 2023. PMID: 37066152 Free PMC article. Preprint.
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