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An evolution-based framework for describing human gut bacteria.
Doran BA, Chen RY, Giba H, Behera V, Barat B, Sundararajan A, Lin H, Sidebottom A, Pamer EG, Raman AS. Doran BA, et al. Among authors: sidebottom a. bioRxiv [Preprint]. 2023 Dec 5:2023.12.04.569969. doi: 10.1101/2023.12.04.569969. bioRxiv. 2023. PMID: 38105970 Free PMC article. Preprint.
Immunomodulatory fecal metabolites are associated with mortality in COVID-19 patients with respiratory failure.
Stutz MR, Dylla NP, Pearson SD, Lecompte-Osorio P, Nayak R, Khalid M, Adler E, Boissiere J, Lin H, Leiter W, Little J, Rose A, Moran D, Mullowney MW, Wolfe KS, Lehmann C, Odenwald M, De La Cruz M, Giurcanu M, Pohlman AS, Hall JB, Chaubard JL, Sundararajan A, Sidebottom A, Kress JP, Pamer EG, Patel BK. Stutz MR, et al. Among authors: sidebottom a. Nat Commun. 2022 Nov 3;13(1):6615. doi: 10.1038/s41467-022-34260-2. Nat Commun. 2022. PMID: 36329015 Free PMC article.
Bifidobacteria metabolize lactulose to optimize gut metabolites and prevent systemic infection in patients with liver disease.
Odenwald MA, Lin H, Lehmann C, Dylla NP, Cole CG, Mostad JD, Pappas TE, Ramaswamy R, Moran A, Hutchison AL, Stutz MR, Dela Cruz M, Adler E, Boissiere J, Khalid M, Cantoral J, Haro F, Oliveira RA, Waligurski E, Cotter TG, Light SH, Beavis KG, Sundararajan A, Sidebottom AM, Reddy KG, Paul S, Pillai A, Te HS, Rinella ME, Charlton MR, Pamer EG, Aronsohn AI. Odenwald MA, et al. Among authors: sidebottom am. Nat Microbiol. 2023 Nov;8(11):2033-2049. doi: 10.1038/s41564-023-01493-w. Epub 2023 Oct 16. Nat Microbiol. 2023. PMID: 37845315 Free PMC article.
Fecal metabolite profiling identifies liver transplant recipients at risk for postoperative infection.
Lehmann CJ, Dylla NP, Odenwald M, Nayak R, Khalid M, Boissiere J, Cantoral J, Adler E, Stutz MR, Dela Cruz M, Moran A, Lin H, Ramaswamy R, Sundararajan A, Sidebottom AM, Little J, Pamer EG, Aronsohn A, Fung J, Baker TB, Kacha A. Lehmann CJ, et al. Among authors: sidebottom am. Cell Host Microbe. 2024 Jan 10;32(1):117-130.e4. doi: 10.1016/j.chom.2023.11.016. Epub 2023 Dec 15. Cell Host Microbe. 2024. PMID: 38103544
Dietary- and host-derived metabolites are used by diverse gut bacteria for anaerobic respiration.
Little AS, Younker IT, Schechter MS, Bernardino PN, Méheust R, Stemczynski J, Scorza K, Mullowney MW, Sharan D, Waligurski E, Smith R, Ramanswamy R, Leiter W, Moran D, McMillin M, Odenwald MA, Iavarone AT, Sidebottom AM, Sundararajan A, Pamer EG, Eren AM, Light SH. Little AS, et al. Among authors: sidebottom am. Nat Microbiol. 2024 Jan;9(1):55-69. doi: 10.1038/s41564-023-01560-2. Epub 2024 Jan 4. Nat Microbiol. 2024. PMID: 38177297 Free PMC article.
Comprehensive analyses of a large human gut Bacteroidales culture collection reveal species and strain level diversity and evolution.
Zhang ZJ, Cole CG, Coyne MJ, Lin H, Dylla N, Smith RC, Waligurski E, Ramaswamy R, Woodson C, Burgo V, Little JC, Moran D, Rose A, McMillin M, McSpadden E, Sundararajan A, Sidebottom AM, Pamer EG, Comstock LE. Zhang ZJ, et al. Among authors: sidebottom am. bioRxiv [Preprint]. 2024 Mar 9:2024.03.08.584156. doi: 10.1101/2024.03.08.584156. bioRxiv. 2024. Update in: Cell Host Microbe. 2024 Oct 9;32(10):1853-1867.e5. doi: 10.1016/j.chom.2024.08.016 PMID: 38496653 Free PMC article. Updated. Preprint.
Reduced immunomodulatory metabolite concentrations in peri-transplant fecal samples from heart allograft recipients.
Dela Cruz M, Lin H, Han J, Adler E, Boissiere J, Khalid M, Sidebottom A, Sundararajan A, Lehmann C, Moran A, Odenwald M, Stutz M, Kim G, Pinney S, Jeevanandam V, Alegre ML, Pamer E, Nguyen AB. Dela Cruz M, et al. Among authors: sidebottom a. Front Transplant. 2023 Jul 17;2:1182534. doi: 10.3389/frtra.2023.1182534. eCollection 2023. Front Transplant. 2023. PMID: 38993864 Free PMC article.
Comprehensive analyses of a large human gut Bacteroidales culture collection reveal species- and strain-level diversity and evolution.
Zhang ZJ, Cole CG, Coyne MJ, Lin H, Dylla N, Smith RC, Pappas TE, Townson SA, Laliwala N, Waligurski E, Ramaswamy R, Woodson C, Burgo V, Little JC, Moran D, Rose A, McMillin M, McSpadden E, Sundararajan A, Sidebottom AM, Pamer EG, Comstock LE. Zhang ZJ, et al. Among authors: sidebottom am. Cell Host Microbe. 2024 Oct 9;32(10):1853-1867.e5. doi: 10.1016/j.chom.2024.08.016. Epub 2024 Sep 17. Cell Host Microbe. 2024. PMID: 39293438
Microbially-catalyzed conjugation of GABA and tyramine to bile acids.
Mullowney MW, Fiebig A, Schnizlein MK, McMillin M, Rose AR, Koval J, Rubin D, Dalal S, Sogin ML, Chang EB, Sidebottom AM, Crosson S. Mullowney MW, et al. Among authors: sidebottom am. bioRxiv [Preprint]. 2023 Dec 13:2023.09.25.559407. doi: 10.1101/2023.09.25.559407. bioRxiv. 2023. Update in: J Bacteriol. 2024 Jan 25;206(1):e0042623. doi: 10.1128/jb.00426-23 PMID: 37808758 Free PMC article. Updated. Preprint.
The Host-specific Microbiota is Required for Diet-Specific Metabolic Homeostasis.
Fei N, Xie B, Long TJ, StGeorge M, Tan A, Manzoor S, Sidebottom AM, Spedale M, Theriault BR, Sulakhe D, Chang EB. Fei N, et al. Among authors: sidebottom am. bioRxiv [Preprint]. 2023 Nov 6:2023.11.05.565654. doi: 10.1101/2023.11.05.565654. bioRxiv. 2023. PMID: 37986759 Free PMC article. Preprint.
203 results