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Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics.
Bittremieux W, Avalon NE, Thomas SP, Kakhkhorov SA, Aksenov AA, Gomes PWP, Aceves CM, Caraballo-Rodríguez AM, Gauglitz JM, Gerwick WH, Huan T, Jarmusch AK, Kaddurah-Daouk RF, Kang KB, Kim HW, Kondić T, Mannochio-Russo H, Meehan MJ, Melnik AV, Nothias LF, O'Donovan C, Panitchpakdi M, Petras D, Schmid R, Schymanski EL, van der Hooft JJJ, Weldon KC, Yang H, Xing S, Zemlin J, Wang M, Dorrestein PC. Bittremieux W, et al. Nat Commun. 2023 Dec 20;14(1):8488. doi: 10.1038/s41467-023-44035-y. Nat Commun. 2023. PMID: 38123557 Free PMC article.
Proteomics Standards Initiative's ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms.
LeDuc RD, Deutsch EW, Binz PA, Fellers RT, Cesnik AJ, Klein JA, Van Den Bossche T, Gabriels R, Yalavarthi A, Perez-Riverol Y, Carver J, Bittremieux W, Kawano S, Pullman B, Bandeira N, Kelleher NL, Thomas PM, Vizcaíno JA. LeDuc RD, et al. Among authors: bittremieux w. J Proteome Res. 2022 Apr 1;21(4):1189-1195. doi: 10.1021/acs.jproteome.1c00771. Epub 2022 Mar 15. J Proteome Res. 2022. PMID: 35290070 Free PMC article.
Mining the Enriched Subgraphs for Specific Vertices in a Biological Graph.
Meysman P, Saeys Y, Sabaghian E, Bittremieux W, Van de Peer Y, Goethals B, Laukens K. Meysman P, et al. Among authors: bittremieux w. IEEE/ACM Trans Comput Biol Bioinform. 2019 Sep-Oct;16(5):1496-1507. doi: 10.1109/TCBB.2016.2576440. Epub 2016 Jun 7. IEEE/ACM Trans Comput Biol Bioinform. 2019. PMID: 27295680
Grasping frequent subgraph mining for bioinformatics applications.
Mrzic A, Meysman P, Bittremieux W, Moris P, Cule B, Goethals B, Laukens K. Mrzic A, et al. Among authors: bittremieux w. BioData Min. 2018 Sep 3;11:20. doi: 10.1186/s13040-018-0181-9. eCollection 2018. BioData Min. 2018. PMID: 30202444 Free PMC article. Review.
Proceedings of the EuBIC developer's meeting 2018.
Willems S, Bouyssié D, Deforce D, Dorfer V, Gorshkov V, Kopczynski D, Laukens K, Locard-Paulet M, Schwämmle V, Uszkoreit J, Valkenborg D, Vaudel M, Bittremieux W. Willems S, et al. Among authors: bittremieux w. J Proteomics. 2018 Sep 15;187:25-27. doi: 10.1016/j.jprot.2018.05.015. Epub 2018 Jun 2. J Proteomics. 2018. PMID: 29864591
Proceedings of the EuBIC Winter School 2019.
Kopczynski D, Bittremieux W, Bouyssié D, Dorfer V, Locard-Paulet M, Van Puyvelde B, Schwämmle V, Soggiu A, Willems S, Uszkoreit J. Kopczynski D, et al. Among authors: bittremieux w. EuPA Open Proteom. 2019 Aug 17;22-23:4-7. doi: 10.1016/j.euprot.2019.07.002. eCollection 2019 Mar. EuPA Open Proteom. 2019. PMID: 31890545 Free PMC article.
69 results