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Page 1
An Evaluation Framework for Lossy Compression of Genome Sequencing Quality Values.
Alberti C, Daniels N, Hernaez M, Voges J, Goldfeder RL, Hernandez-Lopez AA, Mattavelli M, Berger B. Alberti C, et al. Among authors: hernaez m. Proc Data Compress Conf. 2016 Mar-Apr;2016:221-230. doi: 10.1109/DCC.2016.39. Epub 2016 Dec 19. Proc Data Compress Conf. 2016. PMID: 28845445 Free PMC article.
Cell-type specific polysome profiling from mammalian tissues.
Seimetz J, Arif W, Bangru S, Hernaez M, Kalsotra A. Seimetz J, et al. Among authors: hernaez m. Methods. 2019 Feb 15;155:131-139. doi: 10.1016/j.ymeth.2018.11.015. Epub 2018 Nov 27. Methods. 2019. PMID: 30500367 Free PMC article.
Sentieon DNASeq Variant Calling Workflow Demonstrates Strong Computational Performance and Accuracy.
Kendig KI, Baheti S, Bockol MA, Drucker TM, Hart SN, Heldenbrand JR, Hernaez M, Hudson ME, Kalmbach MT, Klee EW, Mattson NR, Ross CA, Taschuk M, Wieben ED, Wiepert M, Wildman DE, Mainzer LS. Kendig KI, et al. Among authors: hernaez m. Front Genet. 2019 Aug 20;10:736. doi: 10.3389/fgene.2019.00736. eCollection 2019. Front Genet. 2019. PMID: 31481971 Free PMC article.
iDoComp: a compression scheme for assembled genomes.
Ochoa I, Hernaez M, Weissman T. Ochoa I, et al. Among authors: hernaez m. Bioinformatics. 2015 Mar 1;31(5):626-33. doi: 10.1093/bioinformatics/btu698. Epub 2014 Oct 24. Bioinformatics. 2015. PMID: 25344501 Free PMC article.
Aligned genomic data compression via improved modeling.
Ochoa I, Hernaez M, Weissman T. Ochoa I, et al. Among authors: hernaez m. J Bioinform Comput Biol. 2014 Dec;12(6):1442002. doi: 10.1142/S0219720014420025. J Bioinform Comput Biol. 2014. PMID: 25395305 Free PMC article.
QVZ: lossy compression of quality values.
Malysa G, Hernaez M, Ochoa I, Rao M, Ganesan K, Weissman T. Malysa G, et al. Among authors: hernaez m. Bioinformatics. 2015 Oct 1;31(19):3122-9. doi: 10.1093/bioinformatics/btv330. Epub 2015 May 28. Bioinformatics. 2015. PMID: 26026138 Free PMC article.
104 results