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OpenMM 8: Molecular Dynamics Simulation with Machine Learning Potentials.
Eastman P, Galvelis R, Peláez RP, Abreu CRA, Farr SE, Gallicchio E, Gorenko A, Henry MM, Hu F, Huang J, Krämer A, Michel J, Mitchell JA, Pande VS, Rodrigues JP, Rodriguez-Guerra J, Simmonett AC, Singh S, Swails J, Turner P, Wang Y, Zhang I, Chodera JD, De Fabritiis G, Markland TE. Eastman P, et al. Among authors: chodera jd. J Phys Chem B. 2024 Jan 11;128(1):109-116. doi: 10.1021/acs.jpcb.3c06662. Epub 2023 Dec 28. J Phys Chem B. 2024. PMID: 38154096 Free PMC article.
Hypoxia Induces Production of L-2-Hydroxyglutarate.
Intlekofer AM, Dematteo RG, Venneti S, Finley LW, Lu C, Judkins AR, Rustenburg AS, Grinaway PB, Chodera JD, Cross JR, Thompson CB. Intlekofer AM, et al. Among authors: chodera jd. Cell Metab. 2015 Aug 4;22(2):304-11. doi: 10.1016/j.cmet.2015.06.023. Epub 2015 Jul 23. Cell Metab. 2015. PMID: 26212717 Free PMC article.
The ribosome modulates nascent protein folding.
Kaiser CM, Goldman DH, Chodera JD, Tinoco I Jr, Bustamante C. Kaiser CM, et al. Among authors: chodera jd. Science. 2011 Dec 23;334(6063):1723-7. doi: 10.1126/science.1209740. Science. 2011. PMID: 22194581 Free PMC article.
Limitations of constant-force-feedback experiments.
Elms PJ, Chodera JD, Bustamante CJ, Marqusee S. Elms PJ, et al. Among authors: chodera jd. Biophys J. 2012 Oct 3;103(7):1490-9. doi: 10.1016/j.bpj.2012.06.051. Epub 2012 Oct 2. Biophys J. 2012. PMID: 23062341 Free PMC article.
The molten globule state is unusually deformable under mechanical force.
Elms PJ, Chodera JD, Bustamante C, Marqusee S. Elms PJ, et al. Among authors: chodera jd. Proc Natl Acad Sci U S A. 2012 Mar 6;109(10):3796-801. doi: 10.1073/pnas.1115519109. Epub 2012 Feb 21. Proc Natl Acad Sci U S A. 2012. PMID: 22355138 Free PMC article.
133 results