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Single-sample network modeling on omics data.
De Marzio M, Glass K, Kuijjer ML. De Marzio M, et al. Among authors: glass k. BMC Biol. 2023 Dec 29;21(1):296. doi: 10.1186/s12915-023-01783-z. BMC Biol. 2023. PMID: 38155351 Free PMC article.
PyPanda: a Python package for gene regulatory network reconstruction.
van IJzendoorn DG, Glass K, Quackenbush J, Kuijjer ML. van IJzendoorn DG, et al. Among authors: glass k. Bioinformatics. 2016 Nov 1;32(21):3363-3365. doi: 10.1093/bioinformatics/btw422. Epub 2016 Jul 10. Bioinformatics. 2016. PMID: 27402905 Free PMC article.
Biomarker correlation network in colorectal carcinoma by tumor anatomic location.
Nishihara R, Glass K, Mima K, Hamada T, Nowak JA, Qian ZR, Kraft P, Giovannucci EL, Fuchs CS, Chan AT, Quackenbush J, Ogino S, Onnela JP. Nishihara R, et al. Among authors: glass k. BMC Bioinformatics. 2017 Jun 17;18(1):304. doi: 10.1186/s12859-017-1718-5. BMC Bioinformatics. 2017. PMID: 28623901 Free PMC article.
Exploring regulation in tissues with eQTL networks.
Fagny M, Paulson JN, Kuijjer ML, Sonawane AR, Chen CY, Lopes-Ramos CM, Glass K, Quackenbush J, Platig J. Fagny M, et al. Among authors: glass k. Proc Natl Acad Sci U S A. 2017 Sep 12;114(37):E7841-E7850. doi: 10.1073/pnas.1707375114. Epub 2017 Aug 29. Proc Natl Acad Sci U S A. 2017. PMID: 28851834 Free PMC article.
Regulatory network changes between cell lines and their tissues of origin.
Lopes-Ramos CM, Paulson JN, Chen CY, Kuijjer ML, Fagny M, Platig J, Sonawane AR, DeMeo DL, Quackenbush J, Glass K. Lopes-Ramos CM, et al. Among authors: glass k. BMC Genomics. 2017 Sep 12;18(1):723. doi: 10.1186/s12864-017-4111-x. BMC Genomics. 2017. PMID: 28899340 Free PMC article.
Understanding Tissue-Specific Gene Regulation.
Sonawane AR, Platig J, Fagny M, Chen CY, Paulson JN, Lopes-Ramos CM, DeMeo DL, Quackenbush J, Glass K, Kuijjer ML. Sonawane AR, et al. Among authors: glass k. Cell Rep. 2017 Oct 24;21(4):1077-1088. doi: 10.1016/j.celrep.2017.10.001. Cell Rep. 2017. PMID: 29069589 Free PMC article.
Estimating Sample-Specific Regulatory Networks.
Kuijjer ML, Tung MG, Yuan G, Quackenbush J, Glass K. Kuijjer ML, et al. Among authors: glass k. iScience. 2019 Apr 26;14:226-240. doi: 10.1016/j.isci.2019.03.021. Epub 2019 Mar 28. iScience. 2019. PMID: 30981959 Free PMC article.
581 results