Otomo A - Search Results

1

Sub-Tip-Radius Near-Field Interactions in Nano-FTIR Vibrational Spectroscopy on Single Proteins.

Nishida J, Otomo A, Koitaya T, Shiotari A, Minato T, Iino R, Kumagai T. Nishida J, et al. Among authors: otomo a. Nano Lett. 2024 Jan 24;24(3):836-843. doi: 10.1021/acs.nanolett.3c03479. Epub 2024 Jan 9. Nano Lett. 2024. PMID: 38193723

2

Allosteric Communication with the Retinal Chromophore upon Ion Binding in a Light-Driven Sodium Ion-Pumping Rhodopsin.

Otomo A, Mizuno M, Inoue K, Kandori H, Mizutani Y. Otomo A, et al. Biochemistry. 2020 Feb 4;59(4):520-529. doi: 10.1021/acs.biochem.9b01062. Epub 2020 Jan 9. Biochemistry. 2020. PMID: 31887021

3

Direct observation of stepping rotation of V-ATPase reveals rigid component in coupling between V_o and V₁ motors.

Otomo A, Iida T, Okuni Y, Ueno H, Murata T, Iino R. Otomo A, et al. Proc Natl Acad Sci U S A. 2022 Oct 18;119(42):e2210204119. doi: 10.1073/pnas.2210204119. Epub 2022 Oct 10. Proc Natl Acad Sci U S A. 2022. PMID: 36215468 Free PMC article.

4

Visualizing Single V-ATPase Rotation Using Janus Nanoparticles.

Otomo A, Wiemann J, Bhattacharyya S, Yamamoto M, Yu Y, Iino R. Otomo A, et al. bioRxiv [Preprint]. 2024 Aug 22:2024.08.22.609254. doi: 10.1101/2024.08.22.609254. bioRxiv. 2024. Update in: Nano Lett. 2024 Dec 11;24(49):15638-15644. doi: 10.1021/acs.nanolett.4c04109 PMID: 39229122 Free PMC article. Updated. Preprint.

5

Protein dynamics of a light-driven Na⁺ pump rhodopsin probed using a tryptophan residue near the retinal chromophore.

Otomo A, Mizuno M, Inoue K, Kandori H, Mizutani Y. Otomo A, et al. Biophys Physicobiol. 2023 Feb 25;20(Supplemental):e201016. doi: 10.2142/biophysico.bppb-v20.s016. eCollection 2023 Mar 21. Biophys Physicobiol. 2023. PMID: 38362331 Free PMC article.

6

Unusual Vibrational Coupling of the Schiff Base in the Retinal Chromophore of Sodium Ion-Pumping Rhodopsins.

Nakamura T, Shinozaki Y, Otomo A, Urui T, Mizuno M, Abe-Yoshizumi R, Hashimoto M, Kojima K, Sudo Y, Kandori H, Mizutani Y. Nakamura T, et al. Among authors: otomo a. J Phys Chem B. 2024 Aug 15;128(32):7813-7821. doi: 10.1021/acs.jpcb.4c04466. Epub 2024 Aug 1. J Phys Chem B. 2024. PMID: 39090991

7

Resonance Raman Investigation of the Chromophore Structure of Heliorhodopsins.

Otomo A, Mizuno M, Singh M, Shihoya W, Inoue K, Nureki O, Béjà O, Kandori H, Mizutani Y. Otomo A, et al. J Phys Chem Lett. 2018 Nov 15;9(22):6431-6436. doi: 10.1021/acs.jpclett.8b02741. Epub 2018 Oct 29. J Phys Chem Lett. 2018. PMID: 30351947

8

Resonance Raman Determination of Chromophore Structures of Heliorhodopsin Photointermediates.

Urui T, Mizuno M, Otomo A, Kandori H, Mizutani Y. Urui T, et al. Among authors: otomo a. J Phys Chem B. 2021 Jul 8;125(26):7155-7162. doi: 10.1021/acs.jpcb.1c04010. Epub 2021 Jun 24. J Phys Chem B. 2021. PMID: 34167296

9

A Study of the Dynamics of the Heme Pocket and C-helix in CooA upon CO Dissociation Using Time-Resolved Visible and UV Resonance Raman Spectroscopy.

Otomo A, Ishikawa H, Mizuno M, Kimura T, Kubo M, Shiro Y, Aono S, Mizutani Y. Otomo A, et al. J Phys Chem B. 2016 Aug 18;120(32):7836-43. doi: 10.1021/acs.jpcb.6b05634. Epub 2016 Aug 5. J Phys Chem B. 2016. PMID: 27457181

10

Visualizing Single V-ATPase Rotation Using Janus Nanoparticles.

Otomo A, Wiemann J, Bhattacharyya S, Yamamoto M, Yu Y, Iino R. Otomo A, et al. Nano Lett. 2024 Dec 11;24(49):15638-15644. doi: 10.1021/acs.nanolett.4c04109. Epub 2024 Nov 22. Nano Lett. 2024. PMID: 39573818 Free PMC article.

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