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Full-length single-molecule protein fingerprinting.
Filius M, van Wee R, de Lannoy C, Westerlaken I, Li Z, Kim SH, de Agrela Pinto C, Wu Y, Boons GJ, Pabst M, de Ridder D, Joo C. Filius M, et al. Among authors: de lannoy c. Nat Nanotechnol. 2024 May;19(5):652-659. doi: 10.1038/s41565-023-01598-7. Epub 2024 Feb 13. Nat Nanotechnol. 2024. PMID: 38351230
The long reads ahead: de novo genome assembly using the MinION.
de Lannoy C, de Ridder D, Risse J. de Lannoy C, et al. Among authors: de ridder d. F1000Res. 2017 Jul 7;6:1083. doi: 10.12688/f1000research.12012.2. eCollection 2017. F1000Res. 2017. PMID: 29375809 Free PMC article. Review.
FRETboard: Semisupervised classification of FRET traces.
de Lannoy CV, Filius M, Kim SH, Joo C, de Ridder D. de Lannoy CV, et al. Among authors: de ridder d. Biophys J. 2021 Aug 17;120(16):3253-3260. doi: 10.1016/j.bpj.2021.06.030. Epub 2021 Jul 6. Biophys J. 2021. PMID: 34237288 Free PMC article.
Evaluation of FRET X for single-molecule protein fingerprinting.
de Lannoy CV, Filius M, van Wee R, Joo C, de Ridder D. de Lannoy CV, et al. Among authors: de ridder d. iScience. 2021 Oct 5;24(11):103239. doi: 10.1016/j.isci.2021.103239. eCollection 2021 Nov 19. iScience. 2021. PMID: 34729466 Free PMC article.
A blind benchmark of analysis tools to infer kinetic rate constants from single-molecule FRET trajectories.
Götz M, Barth A, Bohr SS, Börner R, Chen J, Cordes T, Erie DA, Gebhardt C, Hadzic MCAS, Hamilton GL, Hatzakis NS, Hugel T, Kisley L, Lamb DC, de Lannoy C, Mahn C, Dunukara D, de Ridder D, Sanabria H, Schimpf J, Seidel CAM, Sigel RKO, Sletfjerding MB, Thomsen J, Vollmar L, Wanninger S, Weninger KR, Xu P, Schmid S. Götz M, et al. Among authors: de ridder d, de lannoy c. Nat Commun. 2022 Sep 14;13(1):5402. doi: 10.1038/s41467-022-33023-3. Nat Commun. 2022. PMID: 36104339 Free PMC article.
baseLess: lightweight detection of sequences in raw MinION data.
Noordijk B, Nijland R, Carrion VJ, Raaijmakers JM, de Ridder D, de Lannoy C. Noordijk B, et al. Among authors: de lannoy c. Bioinform Adv. 2023 Feb 15;3(1):vbad017. doi: 10.1093/bioadv/vbad017. eCollection 2023. Bioinform Adv. 2023. PMID: 36818730 Free PMC article.
Reply to: On the statistical foundation of a recent single molecule FRET benchmark.
Götz M, Barth A, Bohr SS, Börner R, Chen J, Cordes T, Erie DA, Gebhardt C, Hadzic MCAS, Hamilton GL, Hatzakis NS, Hugel T, Kisley L, Lamb DC, de Lannoy C, Mahn C, Dunukara D, de Ridder D, Sanabria H, Schimpf J, Seidel CAM, Sigel RKO, Sletfjerding MB, Thomsen J, Vollmar L, Wanninger S, Weninger KR, Xu P, Schmid S. Götz M, et al. Among authors: de lannoy c. Nat Commun. 2024 Apr 30;15(1):3626. doi: 10.1038/s41467-024-47734-2. Nat Commun. 2024. PMID: 38688911 Free PMC article. No abstract available.
48 results