Wuyun Q - Search Results

1

Recent Progress of Protein Tertiary Structure Prediction.

Wuyun Q, Chen Y, Shen Y, Cao Y, Hu G, Cui W, Gao J, Zheng W. Wuyun Q, et al. Molecules. 2024 Feb 13;29(4):832. doi: 10.3390/molecules29040832. Molecules. 2024. PMID: 38398585 Free PMC article. Review.

2

An Application of Random Walk Resampling to Phylogenetic HMM Inference and Learning.

Wang W, Wuyun Q, Liu KJ. Wang W, et al. Among authors: wuyun q. IEEE Trans Nanobioscience. 2020 Jul;19(3):506-517. doi: 10.1109/TNB.2020.2991302. Epub 2020 May 8. IEEE Trans Nanobioscience. 2020. PMID: 32396096

3

Improved Species-Specific Lysine Acetylation Site Prediction Based on a Large Variety of Features Set.

Wuyun Q, Zheng W, Zhang Y, Ruan J, Hu G. Wuyun Q, et al. PLoS One. 2016 May 16;11(5):e0155370. doi: 10.1371/journal.pone.0155370. eCollection 2016. PLoS One. 2016. PMID: 27183223 Free PMC article.

4

A large-scale comparative assessment of methods for residue-residue contact prediction.

Wuyun Q, Zheng W, Peng Z, Yang J. Wuyun Q, et al. Brief Bioinform. 2018 Mar 1;19(2):219-230. doi: 10.1093/bib/bbw106. Brief Bioinform. 2018. PMID: 27802931

5

PrAS: Prediction of amidation sites using multiple feature extraction.

Wang T, Zheng W, Wuyun Q, Wu Z, Ruan J, Hu G, Gao J. Wang T, et al. Among authors: wuyun q. Comput Biol Chem. 2017 Feb;66:57-62. doi: 10.1016/j.compbiolchem.2016.11.004. Epub 2016 Nov 29. Comput Biol Chem. 2017. PMID: 27918921

6

LOMETS2: improved meta-threading server for fold-recognition and structure-based function annotation for distant-homology proteins.

Zheng W, Zhang C, Wuyun Q, Pearce R, Li Y, Zhang Y. Zheng W, et al. Among authors: wuyun q. Nucleic Acids Res. 2019 Jul 2;47(W1):W429-W436. doi: 10.1093/nar/gkz384. Nucleic Acids Res. 2019. PMID: 31081035 Free PMC article.

7

Detecting distant-homology protein structures by aligning deep neural-network based contact maps.

Zheng W, Wuyun Q, Li Y, Mortuza SM, Zhang C, Pearce R, Ruan J, Zhang Y. Zheng W, et al. Among authors: wuyun q. PLoS Comput Biol. 2019 Oct 17;15(10):e1007411. doi: 10.1371/journal.pcbi.1007411. eCollection 2019 Oct. PLoS Comput Biol. 2019. PMID: 31622328 Free PMC article.

8

FUpred: detecting protein domains through deep-learning-based contact map prediction.

Zheng W, Zhou X, Wuyun Q, Pearce R, Li Y, Zhang Y. Zheng W, et al. Among authors: wuyun q. Bioinformatics. 2020 Jun 1;36(12):3749-3757. doi: 10.1093/bioinformatics/btaa217. Bioinformatics. 2020. PMID: 32227201 Free PMC article.

9

Two-Level Protein Methylation Prediction using structure model-based features.

Zheng W, Wuyun Q, Cheng M, Hu G, Zhang Y. Zheng W, et al. Among authors: wuyun q. Sci Rep. 2020 Apr 7;10(1):6008. doi: 10.1038/s41598-020-62883-2. Sci Rep. 2020. PMID: 32265459 Free PMC article.

10

LOMETS3: integrating deep learning and profile alignment for advanced protein template recognition and function annotation.

Zheng W, Wuyun Q, Zhou X, Li Y, Freddolino PL, Zhang Y. Zheng W, et al. Among authors: wuyun q. Nucleic Acids Res. 2022 Jul 5;50(W1):W454-W464. doi: 10.1093/nar/gkac248. Nucleic Acids Res. 2022. PMID: 35420129 Free PMC article.

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