Zheng W - Search Results

1

Recent Progress of Protein Tertiary Structure Prediction.

Wuyun Q, Chen Y, Shen Y, Cao Y, Hu G, Cui W, Gao J, Zheng W. Wuyun Q, et al. Among authors: zheng w. Molecules. 2024 Feb 13;29(4):832. doi: 10.3390/molecules29040832. Molecules. 2024. PMID: 38398585 Free PMC article. Review.

2

An ensemble method for prediction of conformational B-cell epitopes from antigen sequences.

Zheng W, Zhang C, Hanlon M, Ruan J, Gao J. Zheng W, et al. Comput Biol Chem. 2014 Apr;49:51-8. doi: 10.1016/j.compbiolchem.2014.02.002. Epub 2014 Feb 18. Comput Biol Chem. 2014. PMID: 24607818

3

Analysis of Conformational B-Cell Epitopes in the Antibody-Antigen Complex Using the Depth Function and the Convex Hull.

Zheng W, Ruan J, Hu G, Wang K, Hanlon M, Gao J. Zheng W, et al. PLoS One. 2015 Aug 5;10(8):e0134835. doi: 10.1371/journal.pone.0134835. eCollection 2015. PLoS One. 2015. PMID: 26244562 Free PMC article.

4

Improved Species-Specific Lysine Acetylation Site Prediction Based on a Large Variety of Features Set.

Wuyun Q, Zheng W, Zhang Y, Ruan J, Hu G. Wuyun Q, et al. Among authors: zheng w. PLoS One. 2016 May 16;11(5):e0155370. doi: 10.1371/journal.pone.0155370. eCollection 2016. PLoS One. 2016. PMID: 27183223 Free PMC article.

5

A large-scale comparative assessment of methods for residue-residue contact prediction.

Wuyun Q, Zheng W, Peng Z, Yang J. Wuyun Q, et al. Among authors: zheng w. Brief Bioinform. 2018 Mar 1;19(2):219-230. doi: 10.1093/bib/bbw106. Brief Bioinform. 2018. PMID: 27802931

6

PrAS: Prediction of amidation sites using multiple feature extraction.

Wang T, Zheng W, Wuyun Q, Wu Z, Ruan J, Hu G, Gao J. Wang T, et al. Among authors: zheng w. Comput Biol Chem. 2017 Feb;66:57-62. doi: 10.1016/j.compbiolchem.2016.11.004. Epub 2016 Nov 29. Comput Biol Chem. 2017. PMID: 27918921

7

LOMETS2: improved meta-threading server for fold-recognition and structure-based function annotation for distant-homology proteins.

Zheng W, Zhang C, Wuyun Q, Pearce R, Li Y, Zhang Y. Zheng W, et al. Nucleic Acids Res. 2019 Jul 2;47(W1):W429-W436. doi: 10.1093/nar/gkz384. Nucleic Acids Res. 2019. PMID: 31081035 Free PMC article.

8

Detecting distant-homology protein structures by aligning deep neural-network based contact maps.

Zheng W, Wuyun Q, Li Y, Mortuza SM, Zhang C, Pearce R, Ruan J, Zhang Y. Zheng W, et al. PLoS Comput Biol. 2019 Oct 17;15(10):e1007411. doi: 10.1371/journal.pcbi.1007411. eCollection 2019 Oct. PLoS Comput Biol. 2019. PMID: 31622328 Free PMC article.

9

FUpred: detecting protein domains through deep-learning-based contact map prediction.

Zheng W, Zhou X, Wuyun Q, Pearce R, Li Y, Zhang Y. Zheng W, et al. Bioinformatics. 2020 Jun 1;36(12):3749-3757. doi: 10.1093/bioinformatics/btaa217. Bioinformatics. 2020. PMID: 32227201 Free PMC article.

10

Two-Level Protein Methylation Prediction using structure model-based features.

Zheng W, Wuyun Q, Cheng M, Hu G, Zhang Y. Zheng W, et al. Sci Rep. 2020 Apr 7;10(1):6008. doi: 10.1038/s41598-020-62883-2. Sci Rep. 2020. PMID: 32265459 Free PMC article.

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