Rapsomaniki MA - Search Results

1

ScLinear predicts protein abundance at single-cell resolution.

Hanhart D, Gossi F, Rapsomaniki MA, Kruithof-de Julio M, Chouvardas P. Hanhart D, et al. Among authors: rapsomaniki ma. Commun Biol. 2024 Mar 4;7(1):267. doi: 10.1038/s42003-024-05958-4. Commun Biol. 2024. PMID: 38438709 Free PMC article.

2

Matching single cells across modalities with contrastive learning and optimal transport.

Gossi F, Pati P, Chouvardas P, Martinelli AL, Kruithof-de Julio M, Rapsomaniki MA. Gossi F, et al. Among authors: rapsomaniki ma. Brief Bioinform. 2023 May 19;24(3):bbad130. doi: 10.1093/bib/bbad130. Brief Bioinform. 2023. PMID: 37122067 Free PMC article.

3

CellCycleTRACER accounts for cell cycle and volume in mass cytometry data.

Rapsomaniki MA, Lun XK, Woerner S, Laumanns M, Bodenmiller B, Martínez MR. Rapsomaniki MA, et al. Nat Commun. 2018 Feb 12;9(1):632. doi: 10.1038/s41467-018-03005-5. Nat Commun. 2018. PMID: 29434325 Free PMC article.

4

Analysis of Protein Kinetics Using Fluorescence Recovery After Photobleaching (FRAP).

Giakoumakis NN, Rapsomaniki MA, Lygerou Z. Giakoumakis NN, et al. Among authors: rapsomaniki ma. Methods Mol Biol. 2017;1563:243-267. doi: 10.1007/978-1-4939-6810-7_16. Methods Mol Biol. 2017. PMID: 28324613

5

Spatial protein heterogeneity analysis in frozen tissues to evaluate tumor heterogeneity.

Fomitcheva-Khartchenko A, Rapsomaniki MA, Sobottka B, Schraml P, Kaigala GV. Fomitcheva-Khartchenko A, et al. Among authors: rapsomaniki ma. PLoS One. 2021 Nov 19;16(11):e0259332. doi: 10.1371/journal.pone.0259332. eCollection 2021. PLoS One. 2021. PMID: 34797831 Free PMC article.

6

ATHENA: analysis of tumor heterogeneity from spatial omics measurements.

Martinelli AL, Rapsomaniki MA. Martinelli AL, et al. Among authors: rapsomaniki ma. Bioinformatics. 2022 May 26;38(11):3151-3153. doi: 10.1093/bioinformatics/btac303. Bioinformatics. 2022. PMID: 35485743 Free PMC article.

7

Quantification of tumor heterogeneity: from data acquisition to metric generation.

Kashyap A, Rapsomaniki MA, Barros V, Fomitcheva-Khartchenko A, Martinelli AL, Rodriguez AF, Gabrani M, Rosen-Zvi M, Kaigala G. Kashyap A, et al. Among authors: rapsomaniki ma. Trends Biotechnol. 2022 Jun;40(6):647-676. doi: 10.1016/j.tibtech.2021.11.006. Epub 2021 Dec 28. Trends Biotechnol. 2022. PMID: 34972597 Free article. Review.

8

A Single-Cell Atlas of the Tumor and Immune Ecosystem of Human Breast Cancer.

Wagner J, Rapsomaniki MA, Chevrier S, Anzeneder T, Langwieder C, Dykgers A, Rees M, Ramaswamy A, Muenst S, Soysal SD, Jacobs A, Windhager J, Silina K, van den Broek M, Dedes KJ, Rodríguez Martínez M, Weber WP, Bodenmiller B. Wagner J, et al. Among authors: rapsomaniki ma. Cell. 2019 May 16;177(5):1330-1345.e18. doi: 10.1016/j.cell.2019.03.005. Epub 2019 Apr 11. Cell. 2019. PMID: 30982598 Free PMC article. Clinical Trial.

9

scQUEST: Quantifying tumor ecosystem heterogeneity from mass or flow cytometry data.

Martinelli AL, Wagner J, Bodenmiller B, Rapsomaniki MA. Martinelli AL, et al. Among authors: rapsomaniki ma. STAR Protoc. 2022 Jul 20;3(3):101578. doi: 10.1016/j.xpro.2022.101578. eCollection 2022 Sep 16. STAR Protoc. 2022. PMID: 35880127 Free PMC article.

10

In silico analysis of DNA re-replication across a complete genome reveals cell-to-cell heterogeneity and genome plasticity.

Rapsomaniki MA, Maxouri S, Nathanailidou P, Garrastacho MR, Giakoumakis NN, Taraviras S, Lygeros J, Lygerou Z. Rapsomaniki MA, et al. NAR Genom Bioinform. 2021 Jan 28;3(1):lqaa112. doi: 10.1093/nargab/lqaa112. eCollection 2021 Mar. NAR Genom Bioinform. 2021. PMID: 33554116 Free PMC article.

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