Li R - Search Results

1

Comprehensive genomic and plasmid characterization of multidrug-resistant bacterial strains by R10.4.1 nanopore sequencing.

Ye L, Liu X, Ni Y, Xu Y, Zheng Z, Chen K, Hu Q, Tan L, Guo Z, Wai CK, Chan EWC, Li R, Chen S. Ye L, et al. Among authors: li r. Microbiol Res. 2024 Jun;283:127666. doi: 10.1016/j.micres.2024.127666. Epub 2024 Feb 28. Microbiol Res. 2024. PMID: 38460283

2

Complete genetic dissection and cell type-specific replication of old world alphaviruses, getah virus (GETV) and sagiyama virus (SAGV).

Zhang Y, Yu J, Tan L, Wang X, Li R, Kim DY. Zhang Y, et al. Among authors: li r. J Microbiol. 2021 Nov;59(11):1044-1055. doi: 10.1007/s12275-021-1361-8. Epub 2021 Sep 27. J Microbiol. 2021. PMID: 34570337

3

High-Resolution Metagenomics of Human Gut Microbiota Generated by Nanopore and Illumina Hybrid Metagenome Assembly.

Ye L, Dong N, Xiong W, Li J, Li R, Heng H, Chan EWC, Chen S. Ye L, et al. Among authors: li j, li r. Front Microbiol. 2022 May 12;13:801587. doi: 10.3389/fmicb.2022.801587. eCollection 2022. Front Microbiol. 2022. PMID: 35633679 Free PMC article.

4

Insect-Specific Chimeric Viruses Potentiated Antiviral Responses and Inhibited Pathogenic Alphavirus Growth in Mosquito Cells.

Tan L, Zhang Y, Kim DY, Li R. Tan L, et al. Among authors: li r. Microbiol Spectr. 2023 Feb 14;11(1):e0361322. doi: 10.1128/spectrum.03613-22. Epub 2022 Dec 13. Microbiol Spectr. 2023. PMID: 36511715 Free PMC article.

5

Benchmarking of Nanopore R10.4 and R9.4.1 flow cells in single-cell whole-genome amplification and whole-genome shotgun sequencing.

Ni Y, Liu X, Simeneh ZM, Yang M, Li R. Ni Y, et al. Among authors: li r. Comput Struct Biotechnol J. 2023 Mar 24;21:2352-2364. doi: 10.1016/j.csbj.2023.03.038. eCollection 2023. Comput Struct Biotechnol J. 2023. PMID: 37025654 Free PMC article.

6

Primerdiffer: a python command-line module for large-scale primer design in haplotype genotyping.

Ren X, Shao Y, Zhang Y, Ni Y, Bi Y, Li R. Ren X, et al. Among authors: li r. Bioinformatics. 2023 Apr 3;39(4):btad188. doi: 10.1093/bioinformatics/btad188. Bioinformatics. 2023. PMID: 37067484 Free PMC article.

7

Nanopore sequencing identifies differentially methylated genes in the central nervous system in experimental autoimmune encephalomyelitis.

Si W, Ni Y, Jiang Q, Tan L, Sparagano O, Li R, Yang G. Si W, et al. Among authors: li r. J Neuroimmunol. 2023 Aug 15;381:578134. doi: 10.1016/j.jneuroim.2023.578134. Epub 2023 Jun 21. J Neuroimmunol. 2023. PMID: 37364516

8

Unraveling the whole genome DNA methylation profile of zebrafish kidney marrow by Oxford Nanopore sequencing.

Liu X, Ni Y, Wang D, Ye S, Yang M, Sun X, Leung AYH, Li R. Liu X, et al. Among authors: li r. Sci Data. 2023 Aug 10;10(1):532. doi: 10.1038/s41597-023-02431-5. Sci Data. 2023. PMID: 37563176 Free PMC article.

9

Utilization of nanopore direct RNA sequencing to analyze viral RNA modifications.

Tan L, Guo Z, Wang X, Kim DY, Li R. Tan L, et al. Among authors: li r. mSystems. 2024 Feb 20;9(2):e0116323. doi: 10.1128/msystems.01163-23. Epub 2024 Jan 31. mSystems. 2024. PMID: 38294229 Free PMC article.

10

Chromosome level genome assembly and transcriptome analysis of E11 cells infected by tilapia lake virus.

Wang X, Liu X, Tan L, Jahangiri L, Cai W, Kim DY, Li R. Wang X, et al. Among authors: li r. Fish Shellfish Immunol. 2024 May;148:109505. doi: 10.1016/j.fsi.2024.109505. Epub 2024 Mar 21. Fish Shellfish Immunol. 2024. PMID: 38521144

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