Ni Y - Search Results

1

Comprehensive genomic and plasmid characterization of multidrug-resistant bacterial strains by R10.4.1 nanopore sequencing.

Ye L, Liu X, Ni Y, Xu Y, Zheng Z, Chen K, Hu Q, Tan L, Guo Z, Wai CK, Chan EWC, Li R, Chen S. Ye L, et al. Among authors: ni y. Microbiol Res. 2024 Jun;283:127666. doi: 10.1016/j.micres.2024.127666. Epub 2024 Feb 28. Microbiol Res. 2024. PMID: 38460283

2

Benchmarking of Nanopore R10.4 and R9.4.1 flow cells in single-cell whole-genome amplification and whole-genome shotgun sequencing.

Ni Y, Liu X, Simeneh ZM, Yang M, Li R. Ni Y, et al. Comput Struct Biotechnol J. 2023 Mar 24;21:2352-2364. doi: 10.1016/j.csbj.2023.03.038. eCollection 2023. Comput Struct Biotechnol J. 2023. PMID: 37025654 Free PMC article.

3

Primerdiffer: a python command-line module for large-scale primer design in haplotype genotyping.

Ren X, Shao Y, Zhang Y, Ni Y, Bi Y, Li R. Ren X, et al. Among authors: ni y. Bioinformatics. 2023 Apr 3;39(4):btad188. doi: 10.1093/bioinformatics/btad188. Bioinformatics. 2023. PMID: 37067484 Free PMC article.

4

Nanopore sequencing identifies differentially methylated genes in the central nervous system in experimental autoimmune encephalomyelitis.

Si W, Ni Y, Jiang Q, Tan L, Sparagano O, Li R, Yang G. Si W, et al. Among authors: ni y. J Neuroimmunol. 2023 Aug 15;381:578134. doi: 10.1016/j.jneuroim.2023.578134. Epub 2023 Jun 21. J Neuroimmunol. 2023. PMID: 37364516

5

Unraveling the whole genome DNA methylation profile of zebrafish kidney marrow by Oxford Nanopore sequencing.

Liu X, Ni Y, Wang D, Ye S, Yang M, Sun X, Leung AYH, Li R. Liu X, et al. Among authors: ni y. Sci Data. 2023 Aug 10;10(1):532. doi: 10.1038/s41597-023-02431-5. Sci Data. 2023. PMID: 37563176 Free PMC article.

6

Nanopore Current Events Magnifier (nanoCEM): a novel tool for visualizing current events at modification sites of nanopore sequencing.

Guo Z, Ni Y, Tan L, Shao Y, Ye L, Chen S, Li R. Guo Z, et al. Among authors: ni y. NAR Genom Bioinform. 2024 May 20;6(2):lqae052. doi: 10.1093/nargab/lqae052. eCollection 2024 Jun. NAR Genom Bioinform. 2024. PMID: 38774513 Free PMC article.

7

Giraffe: A tool for comprehensive processing and visualization of multiple long-read sequencing data.

Liu X, Shao Y, Guo Z, Ni Y, Sun X, Leung AYH, Li R. Liu X, et al. Among authors: ni y. Comput Struct Biotechnol J. 2024 Aug 9;23:3241-3246. doi: 10.1016/j.csbj.2024.08.003. eCollection 2024 Dec. Comput Struct Biotechnol J. 2024. PMID: 39279873 Free PMC article.

8

Nanopore strand-specific mismatch enables de novo detection of bacterial DNA modifications.

Liu X, Ni Y, Ye L, Guo Z, Tan L, Li J, Yang M, Chen S, Li R. Liu X, et al. Among authors: ni y. Genome Res. 2024 Nov 20;34(11):2025-2038. doi: 10.1101/gr.279012.124. Genome Res. 2024. PMID: 39358016

9

Upregulation of CD19 by low-dose chidamide promotes CAR T cells functionality in B-cell non-Hodgkin lymphoma.

Ni Y, Zhang Q, Tang X, Li X, Ye S, Lu Y, Liang A, Li P. Ni Y, et al. Discov Oncol. 2025 Jan 24;16(1):84. doi: 10.1007/s12672-025-01810-1. Discov Oncol. 2025. PMID: 39853608

10

Single-Cell RNA Sequencing Reveals Macrophage Dynamics During MASH in Leptin-Deficient Rats.

Xin X, Ni Y, Wang J, Wu F, Liu M, Wu L, Dai J, Wu C, Song X, Zhang W, Yang G, Shen R, Zhu X. Xin X, et al. Among authors: ni y. Cells. 2025 Jan 10;14(2):96. doi: 10.3390/cells14020096. Cells. 2025. PMID: 39851524

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