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Thunder-DDA-PASEF enables high-coverage immunopeptidomics and is boosted by MS2Rescore with MS2PIP timsTOF fragmentation prediction model.
Gomez-Zepeda D, Arnold-Schild D, Beyrle J, Declercq A, Gabriels R, Kumm E, Preikschat A, Łącki MK, Hirschler A, Rijal JB, Carapito C, Martens L, Distler U, Schild H, Tenzer S. Gomez-Zepeda D, et al. Among authors: declercq a. Nat Commun. 2024 Mar 13;15(1):2288. doi: 10.1038/s41467-024-46380-y. Nat Commun. 2024. PMID: 38480730 Free PMC article.
Updated MS²PIP web server supports cutting-edge proteomics applications.
Declercq A, Bouwmeester R, Chiva C, Sabidó E, Hirschler A, Carapito C, Martens L, Degroeve S, Gabriels R. Declercq A, et al. Nucleic Acids Res. 2023 Jul 5;51(W1):W338-W342. doi: 10.1093/nar/gkad335. Nucleic Acids Res. 2023. PMID: 37140039 Free PMC article.
Ionmob: a Python package for prediction of peptide collisional cross-section values.
Teschner D, Gomez-Zepeda D, Declercq A, Łącki MK, Avci S, Bob K, Distler U, Michna T, Martens L, Tenzer S, Hildebrandt A. Teschner D, et al. Among authors: declercq a. Bioinformatics. 2023 Sep 2;39(9):btad486. doi: 10.1093/bioinformatics/btad486. Bioinformatics. 2023. PMID: 37540201 Free PMC article.
Bioinformatics Pipeline for Processing Single-Cell Data.
Declercq A, Demeulemeester N, Gabriels R, Bouwmeester R, Degroeve S, Martens L. Declercq A, et al. Methods Mol Biol. 2024;2817:221-239. doi: 10.1007/978-1-0716-3934-4_15. Methods Mol Biol. 2024. PMID: 38907156
Correction: A multi-stage process to develop quality indicators for community-based palliative care using interRAI data.
Guthrie DM, Williams N, Beach C, Buzath E, Cohen J, Declercq A, Fisher K, Fries BE, Goodridge D, Hermans K, Hirdes JP, Seow H, Silveira M, Sinnarajah A, Stevens S, Tanuseputro P, Taylor D, Vadeboncoeur C, Wityk Martin TL. Guthrie DM, et al. Among authors: declercq a. PLoS One. 2024 Dec 19;19(12):e0316372. doi: 10.1371/journal.pone.0316372. eCollection 2024. PLoS One. 2024. PMID: 39700103 Free PMC article.
Comparison of the oral health status of nursing home residents using the current and the newly developed interRAI oral health section (OHS-interRAI): a cross-sectional study.
Schoebrechts E, de Almeida Mello J, Vandenbulcke PAI, van Hout HPJ, De Lepeleire J, Declercq A, Declerck D, Duyck J. Schoebrechts E, et al. Among authors: declercq a. BMC Geriatr. 2024 Nov 15;24(1):950. doi: 10.1186/s12877-024-05494-0. BMC Geriatr. 2024. PMID: 39548377 Free PMC article.
147 results