Noble WS - Search Results

1

Multi-condition and multi-modal temporal profile inference during mouse embryonic development.

Zhang R, Qiu C, Filippova G, Li G, Shendure J, Vert JP, Deng X, Disteche C, Noble WS. Zhang R, et al. Among authors: noble ws. bioRxiv [Preprint]. 2024 Sep 13:2024.03.03.583179. doi: 10.1101/2024.03.03.583179. bioRxiv. 2024. PMID: 38496477 Free PMC article. Preprint.

2

A new pairwise kernel for biological network inference with support vector machines.

Vert JP, Qiu J, Noble WS. Vert JP, et al. Among authors: noble ws. BMC Bioinformatics. 2007;8 Suppl 10(Suppl 10):S8. doi: 10.1186/1471-2105-8-S10-S8. BMC Bioinformatics. 2007. PMID: 18269702 Free PMC article.

3

Large-scale prediction of protein-protein interactions from structures.

Hue M, Riffle M, Vert JP, Noble WS. Hue M, et al. Among authors: noble ws. BMC Bioinformatics. 2010 Mar 18;11:144. doi: 10.1186/1471-2105-11-144. BMC Bioinformatics. 2010. PMID: 20298601 Free PMC article.

4

Mammalian X upregulation is associated with enhanced transcription initiation, RNA half-life, and MOF-mediated H4K16 acetylation.

Deng X, Berletch JB, Ma W, Nguyen DK, Hiatt JB, Noble WS, Shendure J, Disteche CM. Deng X, et al. Among authors: noble ws. Dev Cell. 2013 Apr 15;25(1):55-68. doi: 10.1016/j.devcel.2013.01.028. Epub 2013 Mar 21. Dev Cell. 2013. PMID: 23523075 Free PMC article.

5

A statistical approach for inferring the 3D structure of the genome.

Varoquaux N, Ay F, Noble WS, Vert JP. Varoquaux N, et al. Among authors: noble ws. Bioinformatics. 2014 Jun 15;30(12):i26-33. doi: 10.1093/bioinformatics/btu268. Bioinformatics. 2014. PMID: 24931992 Free PMC article.

6

Multiple dimensions of epigenetic gene regulation in the malaria parasite Plasmodium falciparum: gene regulation via histone modifications, nucleosome positioning and nuclear architecture in P. falciparum.

Ay F, Bunnik EM, Varoquaux N, Vert JP, Noble WS, Le Roch KG. Ay F, et al. Among authors: noble ws. Bioessays. 2015 Feb;37(2):182-94. doi: 10.1002/bies.201400145. Epub 2014 Nov 13. Bioessays. 2015. PMID: 25394267 Free PMC article.

7

Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes.

Ma W, Ay F, Lee C, Gulsoy G, Deng X, Cook S, Hesson J, Cavanaugh C, Ware CB, Krumm A, Shendure J, Blau CA, Disteche CM, Noble WS, Duan Z. Ma W, et al. Among authors: noble ws. Nat Methods. 2015 Jan;12(1):71-8. doi: 10.1038/nmeth.3205. Epub 2014 Dec 1. Nat Methods. 2015. PMID: 25437436 Free PMC article.

8

Escape from X inactivation varies in mouse tissues.

Berletch JB, Ma W, Yang F, Shendure J, Noble WS, Disteche CM, Deng X. Berletch JB, et al. Among authors: noble ws. PLoS Genet. 2015 Mar 18;11(3):e1005079. doi: 10.1371/journal.pgen.1005079. eCollection 2015 Mar. PLoS Genet. 2015. PMID: 25785854 Free PMC article.

9

The lncRNA Firre anchors the inactive X chromosome to the nucleolus by binding CTCF and maintains H3K27me3 methylation.

Yang F, Deng X, Ma W, Berletch JB, Rabaia N, Wei G, Moore JM, Filippova GN, Xu J, Liu Y, Noble WS, Shendure J, Disteche CM. Yang F, et al. Among authors: noble ws. Genome Biol. 2015 Mar 12;16(1):52. doi: 10.1186/s13059-015-0618-0. Genome Biol. 2015. PMID: 25887447 Free PMC article.

10

Identifying multi-locus chromatin contacts in human cells using tethered multiple 3C.

Ay F, Vu TH, Zeitz MJ, Varoquaux N, Carette JE, Vert JP, Hoffman AR, Noble WS. Ay F, et al. Among authors: noble ws. BMC Genomics. 2015 Feb 25;16(1):121. doi: 10.1186/s12864-015-1236-7. BMC Genomics. 2015. PMID: 25887659 Free PMC article.

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