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VSS-Hi-C: variance-stabilized signals for chromatin contacts.
Kenari NS, Bayat F, Libbrecht MW. Kenari NS, et al. Among authors: libbrecht mw. Bioinformatics. 2024 Nov 28;40(12):btae715. doi: 10.1093/bioinformatics/btae715. Bioinformatics. 2024. PMID: 39658249 Free PMC article.
Robust chromatin state annotation.
Foroozandeh Shahraki M, Farahbod M, Libbrecht MW. Foroozandeh Shahraki M, et al. Among authors: libbrecht mw. Genome Res. 2024 Apr 25;34(3):469-483. doi: 10.1101/gr.278343.123. Genome Res. 2024. PMID: 38514204 Free PMC article.
Author Correction: Perspectives on ENCODE.
ENCODE Project Consortium; Snyder MP, Gingeras TR, Moore JE, Weng Z, Gerstein MB, Ren B, Hardison RC, Stamatoyannopoulos JA, Graveley BR, Feingold EA, Pazin MJ, Pagan M, Gilchrist DA, Hitz BC, Cherry JM, Bernstein BE, Mendenhall EM, Zerbino DR, Frankish A, Flicek P, Myers RM. ENCODE Project Consortium, et al. Nature. 2022 May;605(7909):E4. doi: 10.1038/s41586-021-04213-8. Nature. 2022. PMID: 35474002 Free PMC article. No abstract available.
Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.
ENCODE Project Consortium; Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J, Kawli T, Davis CA, Dobin A, Kaul R, Halow J, Van Nostrand EL, Freese P, Gorkin DU, Shen Y, He Y, Mackiewicz M, Pauli-Behn F, Williams BA, Mortazavi A, Keller CA, Zhang XO, Elhajjajy SI, Huey J, Dickel DE, Snetkova V, Wei X, Wang X, Rivera-Mulia JC, Rozowsky J, Zhang J, Chhetri SB, Zhang J, Victorsen A, White KP, Visel A, Yeo GW, Burge CB, Lécuyer E, Gilbert DM, Dekker J, Rinn J, Mendenhall EM, Ecker JR, Kellis M, Klein RJ, Noble WS, Kundaje A, Guigó R, Farnham PJ, Cherry JM, Myers RM, Ren B, Graveley BR, Gerstein MB, Pennacchio LA, Snyder MP, Bernstein BE, Wold B, Hardison RC, Gingeras TR, Stamatoyannopoulos JA, Weng Z. ENCODE Project Consortium, et al. Nature. 2022 May;605(7909):E3. doi: 10.1038/s41586-021-04226-3. Nature. 2022. PMID: 35474001 Free PMC article. No abstract available.
Continuous chromatin state feature annotation of the human epigenome.
Daneshpajouh H, Chen B, Shokraneh N, Masoumi S, Wiese KC, Libbrecht MW. Daneshpajouh H, et al. Among authors: libbrecht mw. Bioinformatics. 2022 May 26;38(11):3029-3036. doi: 10.1093/bioinformatics/btac283. Bioinformatics. 2022. PMID: 35451453 Free PMC article.
SigTools: exploratory visualization for genomic signals.
Masoumi S, Libbrecht MW, Wiese KC. Masoumi S, et al. Among authors: libbrecht mw. Bioinformatics. 2022 Jan 27;38(4):1126-1128. doi: 10.1093/bioinformatics/btab742. Bioinformatics. 2022. PMID: 34718413
25 results