Wilmes P - Search Results

1

Dispersion of antimicrobial resistant bacteria in pig farms and in the surrounding environment.

Scicchitano D, Leuzzi D, Babbi G, Palladino G, Turroni S, Laczny CC, Wilmes P, Correa F, Leekitcharoenphon P, Savojardo C, Luise D, Martelli P, Trevisi P, Aarestrup FM, Candela M, Rampelli S. Scicchitano D, et al. Among authors: wilmes p. Anim Microbiome. 2024 Mar 30;6(1):17. doi: 10.1186/s42523-024-00305-8. Anim Microbiome. 2024. PMID: 38555432 Free PMC article.

2

Alignment-free visualization of metagenomic data by nonlinear dimension reduction.

Laczny CC, Pinel N, Vlassis N, Wilmes P. Laczny CC, et al. Among authors: wilmes p. Sci Rep. 2014 Mar 31;4:4516. doi: 10.1038/srep04516. Sci Rep. 2014. PMID: 24682077 Free PMC article.

3

VizBin - an application for reference-independent visualization and human-augmented binning of metagenomic data.

Laczny CC, Sternal T, Plugaru V, Gawron P, Atashpendar A, Margossian HH, Coronado S, der Maaten Lv, Vlassis N, Wilmes P. Laczny CC, et al. Among authors: wilmes p. Microbiome. 2015 Jan 20;3(1):1. doi: 10.1186/s40168-014-0066-1. eCollection 2015. Microbiome. 2015. PMID: 25621171 Free PMC article.

4

Phenotypic differentiation of gastrointestinal microbes is reflected in their encoded metabolic repertoires.

Bauer E, Laczny CC, Magnusdottir S, Wilmes P, Thiele I. Bauer E, et al. Among authors: wilmes p. Microbiome. 2015 Nov 30;3:55. doi: 10.1186/s40168-015-0121-6. Microbiome. 2015. PMID: 26617277 Free PMC article.

5

Erratum to: Phenotypic differentiation of gastrointestinal microbes is reflected in their encoded metabolic repertoires.

Bauer E, Laczny CC, Magnusdottir S, Wilmes P, Thiele I. Bauer E, et al. Among authors: wilmes p. Microbiome. 2016 Jul 4;4(1):35. doi: 10.1186/s40168-016-0180-3. Microbiome. 2016. PMID: 27377779 Free PMC article. No abstract available.

6

Integrated multi-omics of the human gut microbiome in a case study of familial type 1 diabetes.

Heintz-Buschart A, May P, Laczny CC, Lebrun LA, Bellora C, Krishna A, Wampach L, Schneider JG, Hogan A, de Beaufort C, Wilmes P. Heintz-Buschart A, et al. Among authors: wilmes p. Nat Microbiol. 2016 Oct 10;2:16180. doi: 10.1038/nmicrobiol.2016.180. Nat Microbiol. 2016. PMID: 27723761

7

Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life.

Wampach L, Heintz-Buschart A, Hogan A, Muller EEL, Narayanasamy S, Laczny CC, Hugerth LW, Bindl L, Bottu J, Andersson AF, de Beaufort C, Wilmes P. Wampach L, et al. Among authors: wilmes p. Front Microbiol. 2017 May 2;8:738. doi: 10.3389/fmicb.2017.00738. eCollection 2017. Front Microbiol. 2017. PMID: 28512451 Free PMC article.

8

Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks.

Roume H, Heintz-Buschart A, Muller EEL, May P, Satagopam VP, Laczny CC, Narayanasamy S, Lebrun LA, Hoopmann MR, Schupp JM, Gillece JD, Hicks ND, Engelthaler DM, Sauter T, Keim PS, Moritz RL, Wilmes P. Roume H, et al. Among authors: wilmes p. NPJ Biofilms Microbiomes. 2015 Jun 17;1:15007. doi: 10.1038/npjbiofilms.2015.7. eCollection 2015. NPJ Biofilms Microbiomes. 2015. PMID: 28721231 Free PMC article.

9

Expressed protein profile of a Tectomicrobium and other microbial symbionts in the marine sponge Aplysina aerophoba as evidenced by metaproteomics.

Chaib De Mares M, Jiménez DJ, Palladino G, Gutleben J, Lebrun LA, Muller EEL, Wilmes P, Sipkema D, van Elsas JD. Chaib De Mares M, et al. Among authors: wilmes p. Sci Rep. 2018 Aug 7;8(1):11795. doi: 10.1038/s41598-018-30134-0. Sci Rep. 2018. PMID: 30087358 Free PMC article.

10

PathoFact: a pipeline for the prediction of virulence factors and antimicrobial resistance genes in metagenomic data.

de Nies L, Lopes S, Busi SB, Galata V, Heintz-Buschart A, Laczny CC, May P, Wilmes P. de Nies L, et al. Among authors: wilmes p. Microbiome. 2021 Feb 17;9(1):49. doi: 10.1186/s40168-020-00993-9. Microbiome. 2021. PMID: 33597026 Free PMC article.

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